View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13114_high_37 (Length: 249)
Name: NF13114_high_37
Description: NF13114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13114_high_37 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 29319060 - 29318819
Alignment:
| Q |
1 |
ctctttatcactttacaacaatttagtcaactcttgctttgaccctcttcaatttgttatctctcctaacatatgtgcaggtattgaaactgttcaagat |
100 |
Q |
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| T |
29319060 |
ctctttatcactttacaacaatttagtcaactcttgctttgaccctcttcaatttgttatctctcctaacatatgtgcaggtattgaaactgttcaagat |
29318961 |
T |
|
| Q |
101 |
tggaatgagaaggtaggtcagaattcacctctcaacactgcttgtaaaccagatctcactgatctttctcaatgcgctttgtgtgttgttgctggattag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| |
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| T |
29318960 |
tggaatgagaaggtaggtcagaattcacctctcaacactgcttgtaaaccagatctcactgatctttctcaatgcgatgtgtgtgttgctgctggattag |
29318861 |
T |
|
| Q |
201 |
aggttaagcagaagcttgtttcagttagtggcaattcttctc |
242 |
Q |
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| T |
29318860 |
aggttaaggataagcttgtttcaattagtggcaattcttctc |
29318819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 717425 - 717655
Alignment:
| Q |
1 |
ctctttatcactttacaacaatttagtcaactcttgctttgaccctcttcaatttgttatctctcctaacatatgtgcaggtattgaaactgttcaagat |
100 |
Q |
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||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
717425 |
ctctttatcactttacaacaacttggtcaactcttgttttgaccctcttcaatttgttatctctcgtaacatatgtgcaggtattgaaactgttcatgat |
717524 |
T |
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| Q |
101 |
tggaatgagaaggtaggtcagaattcacctctcaacactgcttgtaaaccagatctcactgatctttctcaatgcgctttgtgtgttgttgctggattag |
200 |
Q |
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| T |
717525 |
tggaatgagaaagtgggtcagaattcatctttgaatactgcttgtaaaccagatctcactcatctttctcaatgtgatgcatgcgttgctgctggattac |
717624 |
T |
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| Q |
201 |
aggttaagcagaagcttgtttcagttagtgg |
231 |
Q |
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| T |
717625 |
aggttaagcagaagcttgtttcagttagtgg |
717655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 97
Target Start/End: Original strand, 26942185 - 26942214
Alignment:
| Q |
68 |
aacatatgtgcaggtattgaaactgttcaa |
97 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
26942185 |
aacatatgtgcaggtattgaaactgttcaa |
26942214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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