View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13114_high_38 (Length: 249)
Name: NF13114_high_38
Description: NF13114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13114_high_38 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 26656462 - 26656691
Alignment:
| Q |
1 |
tcctttcttcaacttaaaatcaattttaaatgcaaaatcaattcgaattgacaacaacaaattcaggatcgtcatcccctgttgtcacgttcctgacaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26656462 |
tcctttcttcaacttaaaatcaattttaaatgcaaaatcaattcgaattgacaacaacaaattcaggaccgtcatcccctgttgtcacgttcctgacaaa |
26656561 |
T |
|
| Q |
101 |
attttcatcgtctgagggaggtgttttcttcttgaattccaacagcaattctttgatttgtcccacatctattttcaactcattcagcagcttcccttgt |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26656562 |
attttcatcgtctgtgggaggtgttttcttcttgaattccaacagcaattctttgatttgtcccacatctattttcaactcattcagcagcttcccttgt |
26656661 |
T |
|
| Q |
201 |
tcagtggctagcttttccaaagtgctcatt |
230 |
Q |
| |
|
||||||||||||||||| |||||||||||| |
|
|
| T |
26656662 |
tcagtggctagcttttcaaaagtgctcatt |
26656691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 26641689 - 26641902
Alignment:
| Q |
9 |
tcaacttaaaatcaattttaaatgcaaaatcaattcgaattgacaacaacaaattcaggatcgtcatcccctgttgtcacgttcctgacaaaattttcat |
108 |
Q |
| |
|
|||| |||| ||||||||| || | ||||| ||||| ||| ||||||||| |||||| ||||||||| |||||||||||||| |||||| ||||||| |
|
|
| T |
26641689 |
tcaagttaatatcaattttgaaggtaaaattaattctaatcaacaacaacatattcagcatcgtcatctgctgttgtcacgttcttgacaacattttcac |
26641788 |
T |
|
| Q |
109 |
cgtctgagggaggtgttttcttcttgaattccaacagcaattctttgatttgtcccacatctattttcaactcattcagcagcttcccttgttcagtggc |
208 |
Q |
| |
|
| || |||| ||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
26641789 |
cttccgaggaaggtgttttcttcatgaattccaacagcaattctttgatttgcttcatgtctattttcaactcagtcagcagcttcccttgttcactggc |
26641888 |
T |
|
| Q |
209 |
tagcttttccaaag |
222 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
26641889 |
tagcttttacaaag |
26641902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 26662567 - 26662623
Alignment:
| Q |
171 |
attttcaactcattcagcagcttcccttgttcagtggctagcttttccaaagtgctc |
227 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||| ||| ||||||||||||| |||| |
|
|
| T |
26662567 |
attttcaattcagtcagcagcttcccttgttcgctgggcagcttttccaaagcgctc |
26662623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University