View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13114_high_39 (Length: 248)
Name: NF13114_high_39
Description: NF13114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13114_high_39 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 29319040 - 29319252
Alignment:
| Q |
1 |
ttgttgtaaagtgataaagagttaagctttgattgaaaatcttgcatgcatgaaattgaagtttgaagatcttgaagataaaactgagaggtttctctta |
100 |
Q |
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| T |
29319040 |
ttgttgtaaagtgataaagagttaagctttgattgaaaatcttgcatgcatgaaattgaagtttgaagatcttgaagattaaattgagaggtttctctta |
29319139 |
T |
|
| Q |
101 |
gatgccgtgcaaatcctattccaaaaagagacaaagctgatgcacagcatgtgctagtttctttcgatgataaagacttgaaattttgacaagcagaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29319140 |
gatgccgtgcaaatcctattccaaaaagagacaaagctgatgcacaacatgtgctagtttctttcgatgataaagacttgaaattttgacaagcagaaga |
29319239 |
T |
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| Q |
201 |
gttccattggatt |
213 |
Q |
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||||||||||||| |
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| T |
29319240 |
gttccattggatt |
29319252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 717445 - 717214
Alignment:
| Q |
1 |
ttgttgtaaagtgataaagagttaagctttgattgaaaatcttgcatgcatgaaattgaagtttgaagatcttgaagataaaactgagaggtttctctta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| || |||||| | | |
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| T |
717445 |
ttgttgtaaagtgataaagagttaagctttgattgaaaatcttgcatgcatgaatttgaagtttgaagatcttgaagattgaactgtgaagtttctttaa |
717346 |
T |
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| Q |
101 |
gatgccgtgcaaatcctattccaaaaagagacaaagctgatgcacagcatgtgctagtttctttcgatgataaagacttgaaattttgacaagcagaaga |
200 |
Q |
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||||| ||||||||||||||||||| ||||||||| | |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |
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| T |
717345 |
gatgctgtgcaaatcctattccaaagagagacaaaacagatgcacaacatgtgctagtttctttggatgataaagaattgaaattttgacaagctgaaga |
717246 |
T |
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| Q |
201 |
gttccattggattcttaggacatagttaaggt |
232 |
Q |
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|||||| || |||||||||||||||||||||| |
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| T |
717245 |
gttccaatgaattcttaggacatagttaaggt |
717214 |
T |
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