View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13114_high_5 (Length: 553)
Name: NF13114_high_5
Description: NF13114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13114_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 20 - 534
Target Start/End: Original strand, 44331387 - 44331901
Alignment:
| Q |
20 |
acagaggaagtgaaacagaggataattgactggaaggtgaaaatgcagttggagatgaagaagatgacaaagaaagtgacggagaaggcgataacatgga |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44331387 |
acagaggaagtgaaacagaggataattgactggaaggtgaaaatgcagttggagatgaagaagatgacaaagaaagtgacggagaaggcgataacatgga |
44331486 |
T |
|
| Q |
120 |
agaagatgaatgtattgccgccatttgtgattcatagaaccattgttcaagtccttgaaaatcaccagaacctttcagaagctgagaatattgataatag |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44331487 |
agaagatgaatgtattgccgccatttgtgattcatagaaccattgttcaagtccttgaaaatcaccagaacctttcagaagctgagaatattgataatag |
44331586 |
T |
|
| Q |
220 |
tctctcaacatatcagaagaggtttgaaactgaagaaattgttgttgttgtggctgtatttgcggtggtgcaggggaataatgggttgccggagaaacag |
319 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44331587 |
tctctcaacatatcagaagaggtttgaaactgaggaaattgttgttgttgtggctgtatttgcggtggtgcaggggaataatgggttgccggagaaacag |
44331686 |
T |
|
| Q |
320 |
aagatgttgaagtattcaccggaaaagttggtcttgttgcacttgctggaacattttcagggaagttgagtttcgctctgtttcctctgaatcttaatgc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44331687 |
aagatgttgaagtattcaccggaaaagttggtcttgttgcacttgctggaacattttcagggaagttgagtttcgctctgtttcctctgaatcttaatgc |
44331786 |
T |
|
| Q |
420 |
agcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttccaagccatactcttgctgctttgtgtggatctcgaatttctgctgcccatttt |
519 |
Q |
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| T |
44331787 |
agcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttccaagccatactcttgctgctttgtgtggatctcgaatttctgctgcccatttt |
44331886 |
T |
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| Q |
520 |
ccccatggtctctgt |
534 |
Q |
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||||||||||||||| |
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| T |
44331887 |
ccccatggtctctgt |
44331901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 9e-53; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 369 - 530
Target Start/End: Complemental strand, 13410054 - 13409893
Alignment:
| Q |
369 |
aacattttcagggaagttgagtttcgctctgtttcctctgaatcttaatgcagcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttcca |
468 |
Q |
| |
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|||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||| ||||| || |||||||||||||| || || |||||||| |
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| T |
13410054 |
aacattttcagggaagttgagttttgctctgcttcctctgaatctcaatgcagcttcatcataagccctagctgcagcttctgctgtgtcgaatgttcct |
13409955 |
T |
|
| Q |
469 |
agccatactcttgctgctttgtgtggatctcgaatttctgctgcccattttccccatggtct |
530 |
Q |
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| T |
13409954 |
agccatactctttgtgctttgtgtggatctcttatttctgctgcccattttccccatggtct |
13409893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 398 - 530
Target Start/End: Complemental strand, 10554742 - 10554610
Alignment:
| Q |
398 |
tgtttcctctgaatcttaatgcagcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttccaagccatactcttgctgctttgtgtggatc |
497 |
Q |
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|||||||| ||||||| |||||||||||||| ||||| | ||||||||||| || |||||||| || |||||||| ||||||||| |||| | ||||| |
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| T |
10554742 |
tgtttcctttgaatctcaatgcagcttcatcataagcagtagctgcagcttcagctgtttcaaaggtgccaagccacactcttgctccttttttaggatc |
10554643 |
T |
|
| Q |
498 |
tcgaatttctgctgcccattttccccatggtct |
530 |
Q |
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|| ||||| ||||||||||| ||||| ||||| |
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| T |
10554642 |
tcttatttcagctgcccatttcccccaaggtct |
10554610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 421 - 473
Target Start/End: Complemental strand, 10030050 - 10029998
Alignment:
| Q |
421 |
gcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttccaagcca |
473 |
Q |
| |
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|||||||| |||||||||||||| | || || |||||||||||||||||||| |
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| T |
10030050 |
gcttcatcataagctcttgctgcttcctcagctgtttcaaatgttccaagcca |
10029998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 369 - 534
Target Start/End: Original strand, 43490026 - 43490191
Alignment:
| Q |
369 |
aacattttcagggaagttgagtttcgctctgtttcctctgaatcttaatgcagcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttcca |
468 |
Q |
| |
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||||||||||||||| |||||||| ||| |||| ||||| || | | ||||||||||| || ||||| || || ||||| || |||||||||||||| |
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| T |
43490026 |
aacattttcagggaaattgagtttggctttgttgcctctaaaacgaagagcagcttcatcatatgctctagcagctgcttcagctgtttcaaatgttcct |
43490125 |
T |
|
| Q |
469 |
agccatactcttgctgctttgtgtggatctcgaatttctgctgcccattttccccatggtctctgt |
534 |
Q |
| |
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| ||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||| |
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| T |
43490126 |
aaccatactcttgctgctttgaatggatctcttatctctgctgcccattttccccatggtctctgt |
43490191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 374 - 533
Target Start/End: Original strand, 45013877 - 45014036
Alignment:
| Q |
374 |
tttcagggaagttgagtttcgctctgtttcctctgaatcttaatgcagcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttccaagcca |
473 |
Q |
| |
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||||||| || ||||| || ||| || ||||| ||||||| | |||||||||||| || || |||||||| || || |||||||||||||| ||||| |
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| T |
45013877 |
tttcaggaaaattgagcttagctttgcttcctttgaatctgagtgcagcttcatcatatgcaacggctgcagcctcagccgtttcaaatgttcctagcca |
45013976 |
T |
|
| Q |
474 |
tactcttgctgctttgtgtggatctcgaatttctgctgcccattttccccatggtctctg |
533 |
Q |
| |
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||| ||||| || || | ||||| ||||| ||||| ||||| ||||||||||| ||||| |
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| T |
45013977 |
tacccttgccgccttcttcggatcacgaatctctgcagcccactttccccatggcctctg |
45014036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 421 - 475
Target Start/End: Original strand, 49103598 - 49103652
Alignment:
| Q |
421 |
gcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttccaagccata |
475 |
Q |
| |
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||||||||||| ||||| |||||| | |||||||||||||| || |||||||||| |
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|
| T |
49103598 |
gcttcatcgtatgctctagctgcatcctctgcagtttcaaaagtaccaagccata |
49103652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 369 - 534
Target Start/End: Original strand, 38653102 - 38653267
Alignment:
| Q |
369 |
aacattttcagggaagttgagtttcgctctgtttcctctgaatcttaatgcagcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttcca |
468 |
Q |
| |
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|||||||||||||||||||||||| ||| |||||||||| || | |||| ||||| ||| || ||| | |||||| |||| || ||||||||||| || |
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| T |
38653102 |
aacattttcagggaagttgagttttgctttgtttcctctaaaacgcaatgaagcttgatcataggctttagctgcatcttcagctgtttcaaatgtacct |
38653201 |
T |
|
| Q |
469 |
agccatactcttgctgctttgtgtggatctcgaatttctgctgcccattttccccatggtctctgt |
534 |
Q |
| |
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| ||||||||||| |||||| ||||||| || ||||||||||||||||||||||| |||||| |
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|
| T |
38653202 |
aaccatactcttgtagctttgaaaggatctcttatctctgctgcccattttccccatggcctctgt |
38653267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 439 - 534
Target Start/End: Complemental strand, 6568997 - 6568902
Alignment:
| Q |
439 |
gctgcagcttctgcagtttcaaatgttccaagccatactcttgctgctttgtgtggatctcgaatttctgctgcccattttccccatggtctctgt |
534 |
Q |
| |
|
|||||| |||| || || ||||||||||| | ||| ||||| |||||||| | ||| || || ||||| ||||||||||||||||||||||||||| |
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|
| T |
6568997 |
gctgcatcttcagctgtatcaaatgttcctaaccaaactctagctgctttttttgggtcacgtatttcagctgcccattttccccatggtctctgt |
6568902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 439 - 530
Target Start/End: Complemental strand, 6583156 - 6583065
Alignment:
| Q |
439 |
gctgcagcttctgcagtttcaaatgttccaagccatactcttgctgctttgtgtggatctcgaatttctgctgcccattttccccatggtct |
530 |
Q |
| |
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|||||| |||| || || ||||||||||| | ||| ||||| |||||||| | ||| || || ||||| ||||||||||||||||||||||| |
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| T |
6583156 |
gctgcatcttcagctgtgtcaaatgttcctaaccaaactctagctgctttttttgggtcacgtatttcagctgcccattttccccatggtct |
6583065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 421 - 481
Target Start/End: Complemental strand, 1726310 - 1726250
Alignment:
| Q |
421 |
gcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttccaagccatactcttg |
481 |
Q |
| |
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|||||||| || |||||||||||| ||||||| |||||||||||||| | ||||| ||||| |
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| T |
1726310 |
gcttcatcatatgctcttgctgcatcttctgctgtttcaaatgttcctaaccatattcttg |
1726250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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