View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13114_high_9 (Length: 476)
Name: NF13114_high_9
Description: NF13114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13114_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 15 - 468
Target Start/End: Complemental strand, 5940298 - 5939844
Alignment:
| Q |
15 |
accttcactctaaaaaacctcttttctagtccctatttgcacctccaacacctactttcaaacctccacaaattccacaacaaagattctactcttttga |
114 |
Q |
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| T |
5940298 |
accttcactctaaaaaacctcttttctagtccctatttgcacctccaacacctactttcaaacctccacaaattccacaacaaagattctactcttttga |
5940199 |
T |
|
| Q |
115 |
gttcataactcattcatggcctacaatgctgaatcatatccctatagttcaagaagaagagatgaatcagattttaatttgagagaatggtcagtgaaag |
214 |
Q |
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| T |
5940198 |
gttcataactcattcatggcctacaatgctgaatcatatccctatagttcaagaagaagagatgaatcagattttaatttgagagaatggtcagtgaaag |
5940099 |
T |
|
| Q |
215 |
caagaatcactagagagagtaacaacaattctagaaggtattcaggttcttatatgagaagctttagagaagatacaaggtctcaaagatcaaatataac |
314 |
Q |
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| T |
5940098 |
caagaatcactagagagagtaacaacaattctagaaggtattcaggttcttatatgagaagctttagagaagatacaaggtctcaaagatcaaatataac |
5939999 |
T |
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| Q |
315 |
catttctagtactgcttcttctcctggatacccttttaaaggtacattacnnnnnnnccattttaattcacatgaa-ttcatggtttttaacttctttta |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5939998 |
catttctagtactgcttcttctcctggatacccttttaaaggtacattactttttttccattttaattcacatgaatttcatggtttttaacttctttta |
5939899 |
T |
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| Q |
414 |
catctcaaattcaacaattttgttgcagatgaaattgacccttcaacattttctt |
468 |
Q |
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| T |
5939898 |
catctcaaattcaacaatttttttgcagatgaaattgacccttcaacatattctt |
5939844 |
T |
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Back To:
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Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 278 - 363
Target Start/End: Original strand, 6893448 - 6893533
Alignment:
| Q |
278 |
ttagagaagatacaaggtctcaaagatcaaatataaccatttctagtactgcttcttctcctggatacccttttaaaggtacatta |
363 |
Q |
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||||||||||| ||| |||| ||||||||||||||||||||||| |||||||||||||||||||| | || |||||||||||| |
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| T |
6893448 |
ttagagaagattcaaagtcttttagatcaaatataaccatttctagcactgcttcttctcctggatatacattaaaaggtacatta |
6893533 |
T |
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