View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13114_low_12 (Length: 445)
Name: NF13114_low_12
Description: NF13114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13114_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 14 - 430
Target Start/End: Complemental strand, 28073827 - 28073409
Alignment:
| Q |
14 |
gagatgaataattcgaaaaagtaaaagtgaaagccagtattatagaataataacaacgccgtagcgcagcatcatgctttaaaagcattgaataaaa-ga |
112 |
Q |
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| T |
28073827 |
gagatgaataattcgaaaaagtaaaagtgaaagccagtattatagaacaataacaacgccgtagcgtagcatcatgctttaaaagcattgaataaaaaga |
28073728 |
T |
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| Q |
113 |
taactttttgttaacatgtttgttaggcatgaaaaacatcttagtcatcctaatgtgttaggtctcataattagttgctgtatattttttatttaaaatt |
212 |
Q |
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| T |
28073727 |
taactttttgttaacatgtttgttaggcatgaaaaacatcttagtcatcctaatgtgttaggtctcataattagttgctgtatattttttatttaaaatt |
28073628 |
T |
|
| Q |
213 |
actgt-ctccctttcaaaattttccatttctttgatctagtaggaattaatttacgctcgacattttttaacggtagttagttaactcatactgacactt |
311 |
Q |
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| T |
28073627 |
actgttctccctttcaaaattttccatttctttgatctagtaggaattaatttacgctcgacatttttcaacagtagttagttaactcataccgacactt |
28073528 |
T |
|
| Q |
312 |
ttaagatcaattgaataattaggttcttattgaactccctccattataaaatataagcaaagtaataattaaaagattaattcatatagctaattacatt |
411 |
Q |
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||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28073527 |
ttataatcaattgaacaattaggttcttattgaactccctccattataaaatataagcaaagtaataattaaaagattaattcatatagctaattacatt |
28073428 |
T |
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| Q |
412 |
tttgtttgtatttcatttt |
430 |
Q |
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||||||| ||||| ||||| |
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| T |
28073427 |
tttgtttatatttaatttt |
28073409 |
T |
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