View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13114_low_13 (Length: 438)
Name: NF13114_low_13
Description: NF13114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13114_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 8 - 420
Target Start/End: Complemental strand, 2287532 - 2287120
Alignment:
| Q |
8 |
gacatcatcaataacaggaccacaaagagaagaaagatcatcacttctcatactataaaaagtactaagaaacatcacccttgttcttgtcccaacagct |
107 |
Q |
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| T |
2287532 |
gacatcatcaataacaggaccacaaagagaagaaagatcatcacttctcatactataaaaagtactaagaaacatcacccttgttcttgtcccaacagct |
2287433 |
T |
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| Q |
108 |
acaaacttaagcgccgcacgtttgaatccacctttacctttggatgtataaggtaccttaattgtgtctttaccagcaaaagcttcaacaatcattgaac |
207 |
Q |
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| T |
2287432 |
acaaacttaagcgccgcacgtttgaatccacctttacctttggatgtataaggtaccttaattgtgtctttaccagcaaaagcttcaacaatcattgaac |
2287333 |
T |
|
| Q |
208 |
cttcacaggaattgcttgcatcaccaactgaaaatgagaggacataggttttgcctggaattgttctagcaacttgtgctattgcactttcttttcctgc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2287332 |
cttcacaggaattgcttgcatcaccaactgaaaatgagaggacataggttttgcctggaattgttctagcaacttgtgctattgcactttcttttcctgc |
2287233 |
T |
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| Q |
308 |
cactagttcaactgctcttgtgccttgtggaactgagaaatgagctgagtctaggtattttactgcttttaaggattctaccatccatcctgggagaggt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2287232 |
cactagttcaactgctcttgtgccttgtggaactgagaaatgagctgagtctaggtattttactgcttttaaggattctaccatccatcctgggagaggt |
2287133 |
T |
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| Q |
408 |
gaatggtcatctt |
420 |
Q |
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| T |
2287132 |
gaatggtcatctt |
2287120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 400
Target Start/End: Complemental strand, 44409578 - 44409458
Alignment:
| Q |
280 |
cttgtgctattgcactttcttttcctgccactagttcaactgctcttgtgccttgtggaactgagaaatgagctgagtctaggtattttactgcttttaa |
379 |
Q |
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| T |
44409578 |
cttgtgcaagtgcactttcttttcctgctacaagttcaattgctctttttccttctggtactgtgaagtgttcagaatcaatgtattttactgctttcag |
44409479 |
T |
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| Q |
380 |
ggattctaccatccatcctgg |
400 |
Q |
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||||| || ||||||||||| |
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| T |
44409478 |
agattcaactatccatcctgg |
44409458 |
T |
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