View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13114_low_15 (Length: 425)
Name: NF13114_low_15
Description: NF13114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13114_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 51 - 410
Target Start/End: Complemental strand, 23599695 - 23599335
Alignment:
| Q |
51 |
ctcttataattttttatcagtatatgtgttaaaattatatcccgaagctattttgcagtccttcctcaaatttcaagagctatttgaaggatactttttg |
150 |
Q |
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| T |
23599695 |
ctcttgtaattttttatcagcatatgtgttaaaattatatcccgaagctatttt-cagtccttcctcaaatttcaagagctatttgaaggatactttttt |
23599597 |
T |
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| Q |
151 |
aagagaatagcgttaattacgaaaaatataaaatcacacaaggaaaatatgtgtttttagttttacatagactatttttcaacttcgcacacattataaa |
250 |
Q |
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| T |
23599596 |
aagagaataccgttaattatgaagaatataaaatcacacaaggaaaatctgtgtttttagttttacatagactatttttcaacttcgcacacattataaa |
23599497 |
T |
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| Q |
251 |
gagaggttatttgagatattaactctactataaatacgtgccaaacaaggcaccaatctataattccacacggcaaaattaaacaccggtaaacaaacaa |
350 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23599496 |
gagaggttatttgagatattaactctacaataaatacgtgccaagcaaggcaccaatctataattccacacggcaaaattaaacaccggtaaacaaacaa |
23599397 |
T |
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| Q |
351 |
aaacaataatgcattatacacatgattaagctgatg--tataactcgaagaaagtacaatat |
410 |
Q |
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| T |
23599396 |
aaacaataatgcattatacacatgattaagctgatgtatataactcgaagaaagtacaatat |
23599335 |
T |
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