View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13114_low_18 (Length: 380)
Name: NF13114_low_18
Description: NF13114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13114_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 20 - 372
Target Start/End: Complemental strand, 9219608 - 9219257
Alignment:
| Q |
20 |
aggaggttgtcatagacgagatattgttaccaaggttgccattggtaagtcactaagcatagcccacatatattgtcacaagttttagttaggattgaat |
119 |
Q |
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| T |
9219608 |
aggaggttgtcatagacgagatattgttaccaaggttgccattggtaagtcactaagaataacccacatatattttcacaatttctagttaagattgaat |
9219509 |
T |
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| Q |
120 |
cagttgcaaatactcgagtttgataaccgactctagaacaatatttagttacatttacctaagtttaagtcgaactcaagattactaaaagggccgaagg |
219 |
Q |
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| T |
9219508 |
cagt-gcgaatactcgagtttgataactgactctagaacaatttttagttacatttatctaactttaagttgaactccagactactaaaagggtcgaagg |
9219410 |
T |
|
| Q |
220 |
gttaagaccaggnnnnnnntatgattaaagtattcagcatgcatgttagctattgatattaatttataaaacaattcattaacttgctacaacacaattg |
319 |
Q |
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| T |
9219409 |
gttaagaccaggaaaaaaatatgattaaggtattcagcatgcatgttagctattgatattaatttataaaacaattcattaacttgctacaacacaattg |
9219310 |
T |
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| Q |
320 |
aaatgcaggatcaagtgctggactaatagtcctatttgtggcggtttcatctc |
372 |
Q |
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| T |
9219309 |
aaatgcaggatcaagtgctggactaatagtcctatttgtggcggtttcatctc |
9219257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 9162643 - 9162578
Alignment:
| Q |
20 |
aggaggttgtcatagacgagatattgttaccaaggttgccattggtaagtcactaagcatagccca |
85 |
Q |
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| T |
9162643 |
aggaggttgtcatagacgagatattgttatcaaggttgccattggtatgtcactaaacatagccca |
9162578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 9171440 - 9171392
Alignment:
| Q |
20 |
aggaggttgtcatagacgagatattgttaccaaggttgccattggtaag |
68 |
Q |
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| T |
9171440 |
aggagggtgtcatagacgagatgttattaccaaggttgccattggtaag |
9171392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 9179422 - 9179374
Alignment:
| Q |
20 |
aggaggttgtcatagacgagatattgttaccaaggttgccattggtaag |
68 |
Q |
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|||||| ||||||||||||||| || ||||||||||||||||||||||| |
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| T |
9179422 |
aggagggtgtcatagacgagatgttattaccaaggttgccattggtaag |
9179374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 9201131 - 9201067
Alignment:
| Q |
19 |
caggaggttgtcatagacgagatattgttaccaaggttgccattggtaagtcactaagcatagcc |
83 |
Q |
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| T |
9201131 |
caggaggttgtcataaacaagatgttattaccaaggttgcaattggtaagaacctaagcatagcc |
9201067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 368
Target Start/End: Complemental strand, 9162459 - 9162352
Alignment:
| Q |
261 |
catgttagctattgatattaatttataaaacaattcattaacttgctacaacacaattgaaatgcaggatcaagtgctggactaatagtcctatttgtgg |
360 |
Q |
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|||||||||||| ||||||| |||||| ||||||| || || | || ||| ||| || |||||||||| ||||||||||| | || | |||||||||| |
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| T |
9162459 |
catgttagctatcgatattattttatagaacaatttatgaattgacttcaatacatttcaaatgcaggagcaagtgctggaatcattattctatttgtgg |
9162360 |
T |
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| Q |
361 |
cggtttca |
368 |
Q |
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|| ||||| |
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| T |
9162359 |
cgatttca |
9162352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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