View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13114_low_2 (Length: 804)
Name: NF13114_low_2
Description: NF13114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13114_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 755; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 755; E-Value: 0
Query Start/End: Original strand, 1 - 787
Target Start/End: Complemental strand, 2185689 - 2184903
Alignment:
| Q |
1 |
catgcatttaactagaaatgaagataaggtactcattagcacttagcagacatatttaaagaaataagacaatccacaaagttctttatactaaaactgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2185689 |
catgcatttaactagaaatgaagataaggtactcattagcacttagcagacatatttaaagaaataagacaatccacaaagttctttatactaaaactgt |
2185590 |
T |
|
| Q |
101 |
tgggaggccacatgttagcaaaacttgcatgcaattcttgcaataacaaataaagtttcttaatactacgttttgaaattgactttcttacatgcattcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2185589 |
tgggaggccacatgttagcaaaacttgcatgcaattcttgcaataacaaataaagtttcttaatactacgttttgaaattgactttcttacatgcattcc |
2185490 |
T |
|
| Q |
201 |
aggattatcatccaagatttggcacgaatacaaacacatattaatatgaaaaatgcgaacccaacaagagaatataagagagattcatctggtaaaggca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2185489 |
aggattatcatccaagatttggcacgaatacaaacacatatttatatgaaaaatgcgaacccaacgagagaatataagagagattcatctggtaaaggca |
2185390 |
T |
|
| Q |
301 |
ttaaagtgagaaatacagctttgcatataaaatagaagttagtagcacaacctgtactcaacaaatatatgaatagacattcaccctgaagaacaacaaa |
400 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2185389 |
ttacagtgagaaatacagctttgcatataaaatagaagttagtagcacaacctgtactcaacaaatatatgaatagacattcaccctgaagaacaacaaa |
2185290 |
T |
|
| Q |
401 |
gcgaggaagccaatcatctacatcggtatcatcaataggtggagattctcctggaagctctgtccatctctgtagagaaaaagagaaagccagtcagtac |
500 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2185289 |
gcgaggaagccaatcatctacattggtatcatcaataggtggagattctcctggaagctctgtccatctctgtagagaaaaagagaaagccagtcagtac |
2185190 |
T |
|
| Q |
501 |
taagcccgttaggtaatgacgagcagatggatgcaaaatgaactaatgaaggtttggacagttaagtacagttcggatgtataaatatccggatagacga |
600 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2185189 |
taagcccgttaggtaatgacaagcagatggatgcaaaatgaactaatgaaggtttggacagttaagtacagttcggatgtataaatatccggatagacga |
2185090 |
T |
|
| Q |
601 |
gctgaccgtaaaatttcatcaatattttccaacctgtgtcaaataaaaagatcaaagttatgtatggaaaacacaaaaagtattccccagataggggagg |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2185089 |
gctgaccgtaaaatttcatcaatattttccaacctgtgtcatataaaaagatcaaggttatgtatagaaaacacaaaaagtattccccagataggggagg |
2184990 |
T |
|
| Q |
701 |
gctggataaagattaaacactgaatttcaactccaacgtcaagtagctgcctttaacagctttaacagcaaaaagaatcatgtgtgt |
787 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2184989 |
gctggataaagattaaacactgaatttcaactccaacgtcaagtagctgcctttaacagctttaacagcaaaaagaatcatgtgtgt |
2184903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 9e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 350 - 457
Target Start/End: Original strand, 41962188 - 41962295
Alignment:
| Q |
350 |
acctgtactcaacaaatatatgaatagacattcaccctgaagaacaacaaagcgaggaagccaatcatctacatcggtatcatcaataggtggagattct |
449 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||| | || |||||||| |||||||||||||||||||||||||| || |||||||| |||||||| | |||| |
|
|
| T |
41962188 |
acctgtacacaacaaatataagaatatacatgctccatgaagaacgacaaagcgaggaagccaatcatctacttcagtatcatctataggtgggggttct |
41962287 |
T |
|
| Q |
450 |
cctggaag |
457 |
Q |
| |
|
|| ||||| |
|
|
| T |
41962288 |
cccggaag |
41962295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 565 - 639
Target Start/End: Original strand, 41962413 - 41962487
Alignment:
| Q |
565 |
agtacagttcggatgtataaatatccggatagacgagctgaccgtaaaatttcatcaatattttccaacctgtgt |
639 |
Q |
| |
|
|||||||||| |||| |||||| || ||||||||||||||||| | || ||||||||||| || |||||||||| |
|
|
| T |
41962413 |
agtacagttctaatgtttaaatagccagatagacgagctgaccgcagaacttcatcaatatgttgcaacctgtgt |
41962487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University