View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13114_low_20 (Length: 367)
Name: NF13114_low_20
Description: NF13114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13114_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 341
Target Start/End: Original strand, 38728405 - 38728727
Alignment:
| Q |
19 |
gttaaaggttggaatatattattgacaaatattttatctaattaagttacaattaatgagtgactgaatcaatacctgaacttgatagggtggtcttttg |
118 |
Q |
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| T |
38728405 |
gttaaaggttggaatatattattgacaaatattttatctaattaagttacaattaatgagtgacggaatcaatacctgaacttgatagggtgatcttttg |
38728504 |
T |
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| Q |
119 |
ctatggttttggatctctcagagattgaattaggattggtgtgaaggagaagatattcaaggtcacctttatcaccattgggaccaatatttttgcagcc |
218 |
Q |
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| T |
38728505 |
caatggttttggatctctcagagattgaattaggattggtgtgaaggagaagatactcaaggtcacctttatcaccattgggaccaatatttttgcagcc |
38728604 |
T |
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| Q |
219 |
ataaccaaaaggagtagaagtaccagcttgaagtttctctgaagagttttttgagaaaaactctgttccttcattttccaaccttgaaataacctccttt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38728605 |
ataaccaaaaggagtagaagtaccagcttgaagtttctctgtagagttttttgagaaaaactctgttccttcattttccaaccttgaaataacctccttt |
38728704 |
T |
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| Q |
319 |
ggtataccatgattcaccacctt |
341 |
Q |
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||||||||||||||||||||||| |
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| T |
38728705 |
ggtataccatgattcaccacctt |
38728727 |
T |
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