View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13114_low_22 (Length: 348)
Name: NF13114_low_22
Description: NF13114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13114_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 40130386 - 40130715
Alignment:
| Q |
1 |
attggtgagaactgtagggaatggccctgacaatctgtttcccatgaaagatctgcatattcaatacacaacaaactttagtgtcactttcagtttgctt |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40130386 |
attggtgagaactgtagggaatggccctgaaaatctgtttcccatgaaagatctgcatattcaatacacaacaaactttagtgtcactttcaatttgctt |
40130485 |
T |
|
| Q |
101 |
acttgaaaaagaagaaatttaagaggcaatgatcaaaatgtgcatagcagaaagttcttacaaatcaaccaagttcattttagcccattgttgaggtata |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40130486 |
acttgaaaaagaagaaatttaagaggcaatgaccaaaatgtgcatagcagaaagttcttacaaatcaaccaagttcattttagcccattgttgagggata |
40130585 |
T |
|
| Q |
201 |
gaaccagtgatgatgttacgactaaggtccctgattgtatacaaaacaatattgttcgtgaagtgtcagttcagtggtaaaaactataaactgcatggaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40130586 |
gaaccagtgatgatgttacgactaaggtccctgattgtatacaaaacaatattgttcgtgaagtgtcagttcagtggtaaaaactataaactgcatggaa |
40130685 |
T |
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| Q |
301 |
aatcatgcagaggagaatgatagtttcaac |
330 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
40130686 |
aatcatgcagaggagaatgatagtttcaac |
40130715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 128
Target Start/End: Complemental strand, 39490124 - 39490034
Alignment:
| Q |
33 |
atctgtttcccatgaaagatctgcatattcaatacacaacaaactttagtgtcactttcagtttgcttacttgaaaaagaagaaatttaagaggca |
128 |
Q |
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|||| |||||||| ||| || |||||||| |||||||||||||||||||||||| ||| ||| ||| ||||||||||||||| |||||||||| |
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| T |
39490124 |
atctatttcccattaaaaatgtgcatattgaatacacaacaaactttagtgtca-ttttagt----ttagttgaaaaagaagaaacttaagaggca |
39490034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 128
Target Start/End: Complemental strand, 39501314 - 39501224
Alignment:
| Q |
33 |
atctgtttcccatgaaagatctgcatattcaatacacaacaaactttagtgtcactttcagtttgcttacttgaaaaagaagaaatttaagaggca |
128 |
Q |
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|||| |||||||| ||| || |||||||| |||||||||||||||||||||||| ||| ||| ||| ||||||||||||||| |||||||||| |
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| T |
39501314 |
atctatttcccattaaaaatgtgcatattgaatacacaacaaactttagtgtca-ttttagt----ttagttgaaaaagaagaaacttaagaggca |
39501224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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