View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13114_low_23 (Length: 335)
Name: NF13114_low_23
Description: NF13114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13114_low_23 |
 | |
|
| [»] scaffold0028 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0028 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 123213 - 122895
Alignment:
| Q |
1 |
aaaagatcaaagaattgttcctaaaaaatgaggttataaactcatctcaatcttacatgtctgttgcaaaaacatttgtgaatataagaattctaattta |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
123213 |
aaaagatcaaagaattgttcccaaaaaatgaggttacaaactcatctcaatcttacatgtttgttgcaaaaacatttgtgaatataagaattctaattta |
123114 |
T |
|
| Q |
101 |
aattattaacacgcgtttatactttatgtttagaccgatcaaaatgtgcctattgagaatgttgaaatagcagaggtactggaaagtattccttttacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
123113 |
aattattaacacgcgtttatactttatgtttagaccgatcaaaatgtgcctattgagaatgttgaaatagcagaggtactggaaagtattccttttacaa |
123014 |
T |
|
| Q |
201 |
tgagtcatacatctatgttgcaacaaacatttgtcaacataccaattctaaatatgttactaagacaatcttttaannnnnnnnnagaaggatcaagctc |
300 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
123013 |
tgagtcatacatctatgttacaacaaacatttgtcaacataccaattctaaatatgttactaagacaatcttttaa-ttttttttagaaggatcaagctc |
122915 |
T |
|
| Q |
301 |
tccctattcagaatgttggt |
320 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
122914 |
tccctattcagaatgttggt |
122895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University