View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13114_low_24 (Length: 332)
Name: NF13114_low_24
Description: NF13114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13114_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 21384322 - 21383994
Alignment:
| Q |
1 |
atattataatgatctgtcaatatatgtgcatgtaatataaactagattattttcttccacaaaatatctt-attttcttaattattttttactaattaaa |
99 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| |
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| T |
21384322 |
atattataatgatctgtcaatatatgtccatgtaatataaactagattattttcttccacaaaatatctttattttcttaattatattttactacttaaa |
21384223 |
T |
|
| Q |
100 |
acaaattgaccaatttaatcaagtgaatggagtatatcaagtgattaattaa----atttcgaatagagtttctgaagtttgaactctgacaaaaataat |
195 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||| ||||||||||||| |||||||||||||||| ||| ||| |
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| T |
21384222 |
acaaattgaccaatttaatcaagtgaatg-agtatatcaagtgattgattaatcaaattttgaatagagtttctaaagtttgaactctgacggaaacaat |
21384124 |
T |
|
| Q |
196 |
tattgattagacattatttacctcccgattataggtta-aaccagtttcattttaaaaaatcaaatgatttgactgcacatcttcatcgtaaacttttga |
294 |
Q |
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|||||||||||| |||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21384123 |
tattgattagacgttatttacctcctgattataggttataaccagtttcattctaaaaaatcaaatgatttgactgcatatcttcatcgtaaacttttgg |
21384024 |
T |
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| Q |
295 |
atataagggtcctctttaactccttcatct |
324 |
Q |
| |
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||||||||||||||||||||||| |||||| |
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| T |
21384023 |
atataagggtcctctttaactccctcatct |
21383994 |
T |
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