View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13114_low_27 (Length: 302)
Name: NF13114_low_27
Description: NF13114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13114_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 286
Target Start/End: Complemental strand, 6961836 - 6961567
Alignment:
| Q |
16 |
ataaaccgagacaacttaaccaaagtgcgatcnnnnnnnggaatgatgaatagaagagagacaaagtgaaacatacagaaacaacaagagcagaggttgc |
115 |
Q |
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| T |
6961836 |
ataaaccgaga-aacttaatcaaagtgcgatcaaaaaaaggaatgatcaatagaagagagacaaagtgaaacatacagaaacaacaagagcagaggttgc |
6961738 |
T |
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| Q |
116 |
aagagcaaatcctgcaattttagcagaatcagcaaacctatgagctatgtcttgaagagaacaagtgagcttagctccattgtgttccaagccaaaagcc |
215 |
Q |
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| T |
6961737 |
aagagcaaatcctgcaattttagcagaatcagcaaacctatgagctatgtcctgaagagaacaagtgagcttagctccattgtgttccaagccaaaagcc |
6961638 |
T |
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| Q |
216 |
ttagaaatggattgtgttgacttgagatgtaaagtggtgctacgattattgataccaatcttagttggttg |
286 |
Q |
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| T |
6961637 |
ttagaaatggattgtgttgacttgagatgtaaagtggtgctacgattattgataccaatcttagttggttg |
6961567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 259
Target Start/End: Original strand, 33607533 - 33607624
Alignment:
| Q |
168 |
tgaagagaacaagtgagcttagctccattgtgttccaagccaaaagccttagaaatggattgtgttgacttgagatgtaaagtggtgctacg |
259 |
Q |
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| T |
33607533 |
tgaagtgaacaagtaaccttagctccatagtgttccaaaccaaaagccttagaaacagattgagtagacttaagctgcaaactgttgctacg |
33607624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 33607438 - 33607491
Alignment:
| Q |
85 |
aacatacagaaacaacaagagcagaggttgcaagagcaaatcctgcaattttag |
138 |
Q |
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| T |
33607438 |
aacatacagagacaacgagagcagaggtagcaagagcaaatccagcaatcttag |
33607491 |
T |
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