View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13114_low_3 (Length: 692)

Name: NF13114_low_3
Description: NF13114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13114_low_3
NF13114_low_3
[»] chr4 (1 HSPs)
chr4 (18-684)||(45284503-45285169)


Alignment Details
Target: chr4 (Bit Score: 651; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 18 - 684
Target Start/End: Complemental strand, 45285169 - 45284503
Alignment:
Q  18 ctttggtcctgtgtaactcacttgtgagtgattcattgttaatattcaattcatttatctcctcctttgcacttgtaagttcattttttaactgatttaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45285169 ctttggtcctgtgtaactcacttgtgagtgattcattgttaatattcaattcatttatctcctcctttgcacttgtaagttcattttttaactgatttaa 45285070  T
Q  118 ttccatttctaatctatcaatgcaagaagattgatccatgatatatctttccttttgttcaatgtcattgtataagtcctttatggcattagaaggagaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45285069 ttccatttctaatctatcaatgcaagaagattgatccatgatatatctttccttttgttcaatgtcattgtataagtcctttatggcattagaaggagaa 45284970  T
Q  218 tcctcagataaagtgagtgtttcatcaaccatttgtttattttgcaatccatgcagcatatctatattctttctcatatctaccatctcttgttgcgctt 317  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  45284969 tcctcggataaagtgagtgtttcatcaaccatttgtttattttgcaatccatgcagcatatctatattctttctcatatctactatctcttgttgcgctt 45284870  T
Q  318 gatcattatcttttgtagctaattgaatttcctcgtctttctgatacaacattccaatattctgtttctcaactttaatagcagcaagttttgacctgtg 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45284869 gatcattatcttttgtagctaattgaatttcctcgtctttctgatacaacattccaatattctgtttctcaactttaatagcagcaagttttgacctgtg 45284770  T
Q  418 aacacgttcattaagctcatttacttgatgcagaagttcttctttctgttccttttccatcttcaactcattttccaactgttccgccttagtgacagca 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45284769 aacacgttcattaagctcatttacttgatgcagaagttcttctttctgttccttttccatcttcaactcattttccaactgttccgccttagtgacagca 45284670  T
Q  518 ttcaattctgaatctctagcagcaaaaatatcagtatctttgttcagaagctctctttgtgtggccttcaattcactcaaaacatgtgaaagttggtccc 617  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  45284669 ttcaattctgaatctctagcagcaaaaatatcagtatctttgttcagaagctctctttgtgtggacttcaattcactcaaaacatgtgaaagttggtccc 45284570  T
Q  618 gaacttttacagtttctaatctaagatcagccatctctttcatcattgattcaagctcgtctctgct 684  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45284569 gaacttttacagtttctaatctaagatcagccatctctttcatcattgattcaagctcgtctttgct 45284503  T

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