View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13114_low_35 (Length: 274)
Name: NF13114_low_35
Description: NF13114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13114_low_35 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 82; Significance: 9e-39; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 76 - 189
Target Start/End: Complemental strand, 17087207 - 17087094
Alignment:
| Q |
76 |
atactaaaataaccaaaatggtgcagttaagtgagagatgcgtagctatcagtgtggaggtttgattgacttgaggggtgatgctggtgagtaaatattt |
175 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| ||| ||||| ||||||| || |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17087207 |
atactaaaataaccaaaatggtgcggttaagtgagagatgcttagttatcaatgtggagcttggattgacttgaggggtgatgctggtgagtacatattt |
17087108 |
T |
|
| Q |
176 |
agatgatcggtgtt |
189 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
17087107 |
agatgatcgatgtt |
17087094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 185 - 256
Target Start/End: Complemental strand, 17084739 - 17084667
Alignment:
| Q |
185 |
gtgttaatttggcaatgtacagtccaagaaaattgtcaatagttgaattcaagaatgag-aaaaggttggtga |
256 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
17084739 |
gtgttaatttggtaatgtacagtccatgaaaattgtcaatagttgaattcaagaatgagaaaaaggttggtga |
17084667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 17087272 - 17087240
Alignment:
| Q |
13 |
aatatattaaactatctatgaaatatacctcac |
45 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
17087272 |
aatatattaaactatctatgaaatatacctcac |
17087240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 111
Target Start/End: Complemental strand, 17001980 - 17001945
Alignment:
| Q |
76 |
atactaaaataaccaaaatggtgcagttaagtgaga |
111 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |
|
|
| T |
17001980 |
atactaaaataaccaaaatggtgcggttaagtgaga |
17001945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 122 - 249
Target Start/End: Complemental strand, 8550043 - 8549916
Alignment:
| Q |
122 |
tatcagtgtggaggtttgattgacttgaggggtgatgctggtgagtaaatatttagatgatcggtgttaatttggcaatgtacagtccaagaaaattgtc |
221 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||||| |||||| ||||||||| ||| | ||||| | | |||||| ||||||||||||| | | |
|
|
| T |
8550043 |
tatcagtgtggaggttggattgaattgaggggtgatgctggtcagtaaagatttagatggtcgatattaatcttgtaatgtaaagtccaagaaaatggcc |
8549944 |
T |
|
| Q |
222 |
aatagttgaattcaagaatgagaaaagg |
249 |
Q |
| |
|
|||||||||| |||||||||||||||| |
|
|
| T |
8549943 |
aatagttgaacacaagaatgagaaaagg |
8549916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 122 - 249
Target Start/End: Original strand, 8537949 - 8538076
Alignment:
| Q |
122 |
tatcagtgtggaggtttgattgacttgaggggtgatgctggtgagtaaatatttagatgatcggtgttaatttggcaatgtacagtccaagaaaattgtc |
221 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||| ||| ||||||| ||||||||| ||| | ||||| | | ||||| ||||||||||| ||||| |
|
|
| T |
8537949 |
tatcagtgtggaggttggattgaattgaggggtgatgttggggagtaaacatttagatggtcgatattaatcttgtaatgttaagtccaagaaagttgtc |
8538048 |
T |
|
| Q |
222 |
aatagttgaattcaagaatgagaaaagg |
249 |
Q |
| |
|
|||||||||| |||||||||||||||| |
|
|
| T |
8538049 |
aatagttgaacacaagaatgagaaaagg |
8538076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 128 - 243
Target Start/End: Complemental strand, 38701349 - 38701234
Alignment:
| Q |
128 |
tgtggaggtttgattgacttgaggggtgatgctggtgagtaaatatttagatgatcggtgttaatttggcaatgtacagtccaagaaaattgtcaatagt |
227 |
Q |
| |
|
||||| |||| || ||| ||||||||||||||||||||||||| || |||||||||| ||||||||||| |||||| ||||||| ||||||| |||||| |
|
|
| T |
38701349 |
tgtggtggttggagtgaattgaggggtgatgctggtgagtaaacatctagatgatcgatgttaatttggtaatgtaaagtccaaaaaaattgacaataga |
38701250 |
T |
|
| Q |
228 |
tgaattcaagaatgag |
243 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
38701249 |
tgagcacaagaatgag |
38701234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 122 - 248
Target Start/End: Complemental strand, 54385525 - 54385399
Alignment:
| Q |
122 |
tatcagtgtggaggtttgattgacttgaggggtgatgctggtgagtaaatatttagatgatcggtgttaatttggcaatgtacagtccaagaaaattgtc |
221 |
Q |
| |
|
||||||||||| |||| || ||| | ||||||||||||||||||||||| || |||| |||| ||||||||||| |||||| ||||||| |||||| | |
|
|
| T |
54385525 |
tatcagtgtggtggttggagtgaatggaggggtgatgctggtgagtaaacatctagagaatcgatgttaatttggtaatgtaaagtccaaagaaattgcc |
54385426 |
T |
|
| Q |
222 |
aatagttgaattcaagaatgagaaaag |
248 |
Q |
| |
|
||||| ||| ||||||||||||||| |
|
|
| T |
54385425 |
aatagctgagcacaagaatgagaaaag |
54385399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University