View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13114_low_38 (Length: 259)
Name: NF13114_low_38
Description: NF13114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13114_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 38937156 - 38936903
Alignment:
| Q |
1 |
tttggaaagaatagtccttctttgactcatgtctacttttcaaacaatagtttctcaggagaacttccttctgacatgtgcaatggcctaaaactacttg |
100 |
Q |
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| T |
38937156 |
tttggaaagaatagtccttctttgactcatgtctacttttcaaacaatagtttctcaggagaacttccttctgacatgtgcaatggcctaaaactacttg |
38937057 |
T |
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| Q |
101 |
ttttggcagtaaataacaacagcttttcagggtcattgccgaaatctttgagaaattgttcatcttttataagaattaggcttgacgataaccagttcaa |
200 |
Q |
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| T |
38937056 |
ttttggcagtaaataacaacagcttttcagggtcattgccgaaatctttgagaaattgttcatcttttataagaattaggcttgatgataaccagttcaa |
38936957 |
T |
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| Q |
201 |
tggaaatatcacagaagcatttgggattcatccaaatcttagtttcatctcact |
254 |
Q |
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| T |
38936956 |
tggaaatatcacagaagcatttgggattcatccaaatcttagtttcatctcact |
38936903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 39305796 - 39306046
Alignment:
| Q |
1 |
tttggaaagaatagtccttctttgactcatgtctacttttcaaacaatagtttctcaggagaacttccttctgacatgtgcaatggcctaaaactacttg |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||| || ||| ||| |
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| T |
39305796 |
tttggaaagaacagtccttctttgactcatgtctacttttcaaacaatagtttctcaggagaacttccttctgaattatgcagtggccacaatctagttg |
39305895 |
T |
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| Q |
101 |
ttttggcagtaaataacaacagcttttcagggtcattgccgaaatctttgagaaattgttcatcttttataagaattaggcttgacgataaccagttcaa |
200 |
Q |
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||||||| ||||||||||||||||||||||| |||||||| || || ||||||||||||||||| || | |||| |||||||||| |||||| |||||| |
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| T |
39305896 |
ttttggccgtaaataacaacagcttttcaggatcattgccaaactccttgagaaattgttcatccttaacaagagttaggcttgatgataacaagttcag |
39305995 |
T |
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| Q |
201 |
tggaaatatcacagaagcatttgggattcatccaaatcttagtttcatctc |
251 |
Q |
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|||||| ||||||||| |||||||||||||| ||||||||| ||||||||| |
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| T |
39305996 |
tggaaacatcacagaatcatttgggattcatacaaatcttattttcatctc |
39306046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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