View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13114_low_43 (Length: 245)
Name: NF13114_low_43
Description: NF13114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13114_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 229
Target Start/End: Original strand, 10508105 - 10508326
Alignment:
| Q |
8 |
cagcacagagctttggacttccctatctaagtccatatcttaattctcttgggtctaatttcacatatggtgcaaacttcgcaacagcaggatcaacaat |
107 |
Q |
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|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||| |||||||||||| |
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| T |
10508105 |
cagcacggagctttcgacttccctatctaagtccatatcttaattctcttgggtctaacttcacacatggtgcaaacttcgcatcaggaggatcaacaat |
10508204 |
T |
|
| Q |
108 |
caatatccctgaaagtattctacctaatggaatactcagtccattttctcttcaaattcaatacattcaattcaaagagttcatatcgaaaacaaaactc |
207 |
Q |
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|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10508205 |
caatatccctaaaagtattctacctaatggaaaactcagtccattttctcttcaaattcaatacattcaattcaaagagttcatatcgaaaacaaaactc |
10508304 |
T |
|
| Q |
208 |
attagagatcaaggtaaattaa |
229 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
10508305 |
attagagatcaaggtaaattaa |
10508326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 8 - 229
Target Start/End: Original strand, 10502399 - 10502620
Alignment:
| Q |
8 |
cagcacagagctttggacttccctatctaagtccatatcttaattctcttgggtctaatttcacatatggtgcaaacttcgcaacagcaggatcaacaat |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||| |
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| T |
10502399 |
cagcacagagctttggacttccctatctaagtccatatcttaattctcttgggtctaacttcacacatggtgcaaacttcgcaacaggaggatcaacaat |
10502498 |
T |
|
| Q |
108 |
caatatccctgaaagtattctacctaatggaatactcagtccattttctcttcaaattcaatacattcaattcaaagagttcatatcgaaaacaaaactc |
207 |
Q |
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|||||||||| | |||||| |||||||||| ||| | ||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||| |
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| T |
10502499 |
caatatccctaatagtattatacctaatgggatatttagtccattttctcttcaaattcagtacattcaattcaaagatttcatatccaaaacaaatctc |
10502598 |
T |
|
| Q |
208 |
attagagatcaaggtaaattaa |
229 |
Q |
| |
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||| | |||||||||||||||| |
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| T |
10502599 |
attcgggatcaaggtaaattaa |
10502620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 10499459 - 10499681
Alignment:
| Q |
8 |
cagcacagagctttggacttccctatctaagtccatatcttaattctcttgggtctaatttcacatatggtgcaaacttcgcaacagcaggatcaacaat |
107 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| ||||||||||| |||||||| |
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| T |
10499459 |
cagcacaaagctttggacttccctatctaagtccatatcttaattctctggggtcaaatttcacacatggtgcaaactttgcaacagcagggtcaacaat |
10499558 |
T |
|
| Q |
108 |
caatatccctgaaagtattctacctaatggaatactcagtccattttctcttcaaattcaatacattcaattcaaagagttcatatcgaaaacaaaactc |
207 |
Q |
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||| || ||| | |||||| ||||||||||||| | ||||||||||| ||||||||||| | ||||||||||||||| |||||| | ||| ||||| || |
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| T |
10499559 |
caaaattcctaatagtattatacctaatggaatgtttagtccattttcccttcaaattcagtccattcaattcaaagatttcataccaaaagcaaaattc |
10499658 |
T |
|
| Q |
208 |
attagagatcaaggtaaattaat |
230 |
Q |
| |
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||||| ||||||||||||||||| |
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| T |
10499659 |
attagggatcaaggtaaattaat |
10499681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 8 - 227
Target Start/End: Original strand, 10485081 - 10485300
Alignment:
| Q |
8 |
cagcacagagctttggacttccctatctaagtccatatcttaattctcttgggtctaatttcacatatggtgcaaacttcgcaacagcaggatcaacaat |
107 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||| ||||||||||| || | || |||||| |||||| |||||| |||||||||| |||||||| |
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| T |
10485081 |
cagcacagagctttggacttccctttcttagtccataccttaattctctcggacccaacttcacacatggtgtaaactttgcaacagcagcgtcaacaat |
10485180 |
T |
|
| Q |
108 |
caatatccctgaaagtattctacctaatggaatactcagtccattttctcttcaaattcaatacattcaattcaaagagttcatatcgaaaacaaaactc |
207 |
Q |
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||| || ||| | |||||| ||||||||||||| |||||||||||| |||| |||||| ||||||||||||| ||| |||||| | | ||||||| || |
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| T |
10485181 |
caaaattcctaatagtattatacctaatggaatgttcagtccattttaccttcgaattcagtacattcaattcagagatttcatacccagaacaaaattc |
10485280 |
T |
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| Q |
208 |
attagagatcaaggtaaatt |
227 |
Q |
| |
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||||| ||||||||| |||| |
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| T |
10485281 |
attagggatcaaggtcaatt |
10485300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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