View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13114_low_7 (Length: 551)
Name: NF13114_low_7
Description: NF13114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13114_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 219 - 533
Target Start/End: Original strand, 33368172 - 33368487
Alignment:
| Q |
219 |
tcatggttgtgattagagtaagagtgaagactatagtgaagaaagtgatgatgaagataaaaagatggttagagagaaagggtactgttgttgatgattg |
318 |
Q |
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| T |
33368172 |
tcatggttgtgattagagtaagagtgaagactatagtgaagaaagtgatgatgaagataaaaagatggttagagagaaagggtactgttgttgatgattg |
33368271 |
T |
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| Q |
319 |
cttgtgatgaggagaagggtggaggagtatgagttttggatttgaattgttcttcatttttctttttggggaatagagagaacaaatagtattatcactc |
418 |
Q |
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| T |
33368272 |
cttgtgatgaggagaagggtgtaggagtatgagttttggatttgaattgttcttcatttttctttttggggaatagagagaacaaatagtattatcactc |
33368371 |
T |
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| Q |
419 |
tatcaagaatgagataagtacatgcatttttgaataatgcttc-tttgtatttgagtatctaatcgtatgcacagagacttacaaaacaaataaatgctg |
517 |
Q |
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| T |
33368372 |
tatcaagaatgagataagtacatgtatttttgaataatgcttcttttgtatttgagtatctgatcgtatgcacatagacttacaaaacaaataaatggtg |
33368471 |
T |
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| Q |
518 |
aaatagtgtaagattt |
533 |
Q |
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| T |
33368472 |
aaatagtgtgagattt |
33368487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 33367964 - 33368114
Alignment:
| Q |
11 |
cagagaagggactcttgggtgagaccaaagataaggaagttggggtttggtgtaaggtgaagagtggttgttatggcgttgatttctgaaaaggacatgg |
110 |
Q |
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| T |
33367964 |
cagagaagggactcttgggtgagaccaaagataaggaagttggggtttggtgtaaggtgaagagtggttgttatggcgttgatttctgaaaaggacatgg |
33368063 |
T |
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| Q |
111 |
atttggtggtggagttcgaggaggaggcgtagtgaaccagagctttagtta |
161 |
Q |
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| T |
33368064 |
atttggtggtggagttcgaggaggaggcgtagtgaacgagagctttagtta |
33368114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 33372165 - 33372298
Alignment:
| Q |
11 |
cagagaagggactcttgggtgagaccaaagataaggaagttggggtttggtgtaaggtgaagagtggttgttatggcgttgatttctgaaaaggacatgg |
110 |
Q |
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| T |
33372165 |
cagagaagtgactcatgggtgagaccaaagatgaggaagttggggtgtggtgtaaggtgaagagtggttgttatagcgttgatttcttcaaaggacatgg |
33372264 |
T |
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| Q |
111 |
atttggtggtggagttcgaggaggaggcgtagtg |
144 |
Q |
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| T |
33372265 |
atttggtggtggtgtttaaggaggaggcatagtg |
33372298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 33372372 - 33372412
Alignment:
| Q |
221 |
atggttgtgattagagtaagagtgaagactatagtgaagaa |
261 |
Q |
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| T |
33372372 |
atggtggtgatgagagtgagagtgaagactatagtgaagaa |
33372412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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