View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13114_low_9 (Length: 495)
Name: NF13114_low_9
Description: NF13114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13114_low_9 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 418; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 18 - 495
Target Start/End: Complemental strand, 29612646 - 29612169
Alignment:
| Q |
18 |
cagctttgtcgtaatagaatgagtacactgagatgatcagcaaaactgcaaagcttatgtaagtttttagttgagcatattttgtggagggtgagagctg |
117 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
29612646 |
cagccttgtcgtaatagaatgagtacactgagatgatcatcaaaactgcaaagcttatgtaagtttttagttgagcatattttgtggatggtgagaactg |
29612547 |
T |
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| Q |
118 |
ctttacatacaatatggtgctaaagatagccaaggaaaacaccacatacagagagattttgaaaatgttccatcttccaattaaacgattgaaagaaggg |
217 |
Q |
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| T |
29612546 |
ctttacaaacaatatggtggtaaagatagccaaggaaaacactccatacagagagaacttgacaatgttccatcttccaattaaacgattgaaagaaggg |
29612447 |
T |
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| Q |
218 |
ctctgaggataacacaataggccaaatacacttgacacaaggccaactagtctccataatgcgttgccactagaaaccttccatgaaatctcaatatctc |
317 |
Q |
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| T |
29612446 |
ctctgagcataacacaataggccaaatacacttgacacaaggccaactagtctccaaaatgcgttgccactagaaaccttcgatgaaatctgaatatctc |
29612347 |
T |
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| Q |
318 |
ccacaacattctgaaaattctgcaatataacaagaattcagtaatgtttgccatgtgtttgtatgaggggattttatgacctaatatatgtaatttaaaa |
417 |
Q |
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| T |
29612346 |
ccacaacattctgaaaattctgcaatataacaagaattcagtaatgtttgccatgtgtttgtatgaggggattttatgacctaatatatgtaatttaaaa |
29612247 |
T |
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| Q |
418 |
aagtgattcactggttaagaatgagctagaaacctacaagctagaaggaacagaaaccaaaaacctcaatttgtactc |
495 |
Q |
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| T |
29612246 |
aagtgattcactggttaagaatgagctagaaacctacaagctagaaggaacagaaaccaaaaacctcaatttgtactc |
29612169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 29524857 - 29524602
Alignment:
| Q |
18 |
cagctttgtcgtaatagaatgagtacactgagatgatcagcaaaactgcaaagcttatgtaagtttttagttgagcatattttgtggagggtgagagctg |
117 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||| |||| |||| | ||||| ||| ||||| |||||| | ||||| | | |
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| T |
29524857 |
cagccttgtcgtaatagaatgagtacactgagatgatcatcaaaactgtgaagcccgtgtagggttttatatgaccatatcgtgtggatgttgagaacgg |
29524758 |
T |
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| Q |
118 |
ctttacatacaatatggtgctaaagatagccaaggaaaacaccacatacagagagattttgaaaatgttccatcttccaattaaacgattgaaagaaggg |
217 |
Q |
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| T |
29524757 |
ctttacaaacaacatggtagtaaagataaccaaggaaaacaccccatacagaaagaacttgagagtgttccattttccaatgaaacgattgaaagaatgg |
29524658 |
T |
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| Q |
218 |
ctctgaggataacacaataggccaaatacacttgacacaaggccaactagtctcca |
273 |
Q |
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| T |
29524657 |
ctctgagcattacataataggcctactacacttgacacaattccaactattctcca |
29524602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 185 - 273
Target Start/End: Original strand, 29528989 - 29529077
Alignment:
| Q |
185 |
ttccatcttccaattaaacgattgaaagaagggctctgaggataacacaataggccaaatacacttgacacaaggccaactagtctcca |
273 |
Q |
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| T |
29528989 |
ttccaccttccaattaatcgattgaaagaagggctcagagcataacataacaggccaactacacttgacataagcccaactactctcca |
29529077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 126 - 274
Target Start/End: Original strand, 29475254 - 29475402
Alignment:
| Q |
126 |
acaatatggtgctaaagatagccaaggaaaacaccacatacagagagattttgaaaatgttccatcttccaattaaacgattgaaagaagggctctgagg |
225 |
Q |
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| T |
29475254 |
acaatatggtggtgaagatagctaaggacaacaccccataaagaaagatctggaaagctttcaattttccaattaatcgattgaaagaagggctcagagc |
29475353 |
T |
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| Q |
226 |
ataacacaataggccaaatacacttgacacaaggccaactagtctccat |
274 |
Q |
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| T |
29475354 |
ataacaaaccagaccgactatacttgacataaggccaactactctccat |
29475402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 29526814 - 29526892
Alignment:
| Q |
19 |
agctttgtcgtaatagaatgagtacactgagatgatcagcaaaactgcaaagcttatgtaagtttttagttgagcatat |
97 |
Q |
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| T |
29526814 |
agctctgtcgtagaagaatgaatacactgagatgatcatcaaaactgcaaagagtgtgcaagttttgagttgaacatat |
29526892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 29528835 - 29528887
Alignment:
| Q |
34 |
gaatgagtacactgagatgatcagcaaaactgcaaagcttatgtaagttttta |
86 |
Q |
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| T |
29528835 |
gaatgagtacacttagatgatcaccaaaaccgcaaagattgtgcaagttttta |
29528887 |
T |
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