View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13115_high_5 (Length: 440)

Name: NF13115_high_5
Description: NF13115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13115_high_5
NF13115_high_5
[»] chr5 (10 HSPs)
chr5 (8-440)||(9851132-9851564)
chr5 (11-287)||(29006483-29006761)
chr5 (307-437)||(9824750-9824880)
chr5 (162-297)||(36203207-36203343)
chr5 (226-316)||(2022631-2022721)
chr5 (226-297)||(43378128-43378199)
chr5 (153-254)||(15205474-15205576)
chr5 (368-440)||(10558614-10558686)
chr5 (339-440)||(19606290-19606391)
chr5 (256-297)||(35369365-35369406)
[»] chr3 (10 HSPs)
chr3 (11-316)||(52653772-52654079)
chr3 (11-317)||(33709828-33710134)
chr3 (8-297)||(40574147-40574435)
chr3 (218-297)||(16729894-16729973)
chr3 (226-306)||(49784174-49784255)
chr3 (226-297)||(29827119-29827190)
chr3 (53-134)||(23686073-23686155)
chr3 (53-134)||(24058310-24058392)
chr3 (191-269)||(23686167-23686244)
chr3 (191-269)||(24058404-24058481)
[»] chr7 (7 HSPs)
chr7 (8-318)||(12239432-12239744)
chr7 (86-269)||(23757029-23757212)
chr7 (197-316)||(37469063-37469182)
chr7 (8-316)||(24870413-24870722)
chr7 (226-290)||(5436972-5437036)
chr7 (201-296)||(1840839-1840931)
chr7 (84-243)||(20464067-20464227)
[»] chr1 (14 HSPs)
chr1 (11-317)||(49061372-49061679)
chr1 (11-297)||(49053792-49054079)
chr1 (226-316)||(21432107-21432197)
chr1 (226-297)||(44524460-44524531)
chr1 (226-316)||(35624689-35624779)
chr1 (8-230)||(42263327-42263551)
chr1 (226-290)||(29681289-29681353)
chr1 (226-290)||(48366493-48366557)
chr1 (8-109)||(52282031-52282135)
chr1 (231-316)||(19310521-19310606)
chr1 (226-297)||(10187018-10187089)
chr1 (228-291)||(43358448-43358511)
chr1 (8-74)||(50059489-50059555)
chr1 (247-287)||(1187551-1187591)
[»] chr8 (5 HSPs)
chr8 (11-264)||(12729389-12729644)
chr8 (8-293)||(44729074-44729364)
chr8 (152-290)||(28695956-28696095)
chr8 (226-316)||(25953601-25953691)
chr8 (8-109)||(14546298-14546399)
[»] chr6 (5 HSPs)
chr6 (8-244)||(11931950-11932187)
chr6 (11-293)||(28611983-28612264)
chr6 (200-316)||(24075619-24075735)
chr6 (226-287)||(21937271-21937332)
chr6 (226-297)||(24509270-24509341)
[»] chr4 (16 HSPs)
chr4 (11-175)||(24391833-24391997)
chr4 (8-269)||(48779718-48779981)
chr4 (10-297)||(20251407-20251696)
chr4 (226-316)||(3415594-3415684)
chr4 (226-295)||(3425142-3425211)
chr4 (226-306)||(18736841-18736921)
chr4 (211-315)||(24129141-24129245)
chr4 (226-296)||(18670533-18670603)
chr4 (226-316)||(18716158-18716248)
chr4 (231-295)||(30020297-30020361)
chr4 (226-282)||(32429726-32429782)
chr4 (10-74)||(47078091-47078155)
chr4 (8-74)||(24129398-24129464)
chr4 (8-74)||(27538148-27538214)
chr4 (251-297)||(47071122-47071168)
chr4 (105-167)||(52984475-52984537)
[»] scaffold0007 (1 HSPs)
scaffold0007 (8-290)||(217744-218017)
[»] chr2 (6 HSPs)
chr2 (8-272)||(14218742-14219007)
chr2 (247-311)||(8367467-8367531)
chr2 (247-297)||(42779886-42779936)
chr2 (226-299)||(716051-716123)
chr2 (23-264)||(34680971-34681209)
chr2 (247-297)||(16272133-16272183)


Alignment Details
Target: chr5 (Bit Score: 425; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 8 - 440
Target Start/End: Complemental strand, 9851564 - 9851132
Alignment:
Q  8 ataatactaaatcagtctttcttttctctagtgcacaagagaatgtgacaaaactttattctgtaaaacaccattgtcgatacgcttggtgtgaatgtgc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9851564 ataatactaaatcagtctttcttttctctagtgcacaagagaatgtgacaaaactttattctgtaaaacaccattgtcgatacgcttggtgtgaatgtgc 9851465  T
Q  108 aaatcacattaagtattccatcgtatcttgaaggggattcgccggtatacccttttgcattcggttggcttaattggtagggagaattgaacctaaatgt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9851464 aaatcacattaagtattccatcgtatcttgaaggggattcgccggtatacccttttgcattcggttggcttaactggtagggagaattgaacctaaatgt 9851365  T
Q  208 tagtgtgtcccacacacgctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgcagcagacctcctacacat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9851364 tagtgtgtcccacacacgctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgcagcagacctcctacacat 9851265  T
Q  308 gttctaacagttgtttttctcatcataattctgctgcttattgtagctatctacttaacaaggaaaacaaacaagaaatctacttcatattcaccaacag 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9851264 gttctaacagttgtttttctcatcataattctgctgcttattgtagctatctacttaataaggaaaacaaacaagaaatctacttcatattcaccaacag 9851165  T
Q  408 ttgaccaactagatatggtttcttaccaagact 440  Q
    |||||||||||||||||||||||||||||||||    
T  9851164 ttgaccaactagatatggtttcttaccaagact 9851132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 11 - 287
Target Start/End: Original strand, 29006483 - 29006761
Alignment:
Q  11 atactaaatcagtctttcttttctctagtgcacaagagaatgtgacaaaactttattctgtaaaac-accattgtcgatacgcttggtgtgaatgtgcaa 109  Q
    ||||||||||| || ||||||| |||||||||| ||| ||  ||||| |||||||||||||||||| | ||||| |||||||||||||||||||||| |     
T  29006483 atactaaatcattcattcttttttctagtgcacgagataagttgacagaactttattctgtaaaactaacattgacgatacgcttggtgtgaatgtgtat 29006582  T
Q  110 atcacattaagtattccatcgtatcttgaaggggattcgccggtata-cccttttgcattcggttggcttaattggtagggagaattgaacctaaatgtt 208  Q
     |||  | ||| ||||||| ||||  ||||| |||||||||  |||| |||||||||||  |||||    || | || ||| |||| ||||||||| |||    
T  29006583 gtcatgtcaaggattccattgtattctgaagaggattcgccaatataacccttttgcatctggttgataaaactagtggggcgaatcgaacctaaaagtt 29006682  T
Q  209 agtgtgtcccacacacgctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttatt 287  Q
    |||||||| ||||||||||||| |||||||||||||  |||||||| |||||||| ||||||||||| ||||| |||||    
T  29006683 agtgtgtctcacacacgctttgaaatttatgtgcactcttcatcatattcatcttgatcatcttttttatcaaattatt 29006761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 307 - 437
Target Start/End: Original strand, 9824750 - 9824880
Alignment:
Q  307 tgttctaacagttgtttttctcatcataattctgctgcttattgtagctatctacttaacaaggaaaacaaacaagaaatctacttcatattcaccaaca 406  Q
    ||||||||||||||||| ||||||||||||  || |||||||| |||||||||||||  ||||||||| ||||||||||||  || || | |||||||||    
T  9824750 tgttctaacagttgtttctctcatcataatggtgttgcttattctagctatctacttgtcaaggaaaataaacaagaaatcatctccagaatcaccaaca 9824849  T
Q  407 gttgaccaactagatatggtttcttaccaag 437  Q
    ||||||||||||||||||||||| |||||||    
T  9824850 gttgaccaactagatatggtttcctaccaag 9824880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 162 - 297
Target Start/End: Original strand, 36203207 - 36203343
Alignment:
Q  162 ttgcattcggttggcttaattggtaggga-gaattgaacctaaatgttagtgtgtcccacacacgctttggaatttatgtgcacaattcatcatgttcat 260  Q
    |||||| |||||||| ||| |||| |||| |||| |||| |||| ||||||||| |||||||||||  || |||||||||||||||||||| ||||||||    
T  36203207 ttgcatccggttggcataactggtggggacgaatcgaacttaaaggttagtgtggcccacacacgccatgaaatttatgtgcacaattcattatgttcat 36203306  T
Q  261 cttcatcatctttttgatcaagttattgcagcagacc 297  Q
    |||||||||||| ||||| |||||||| |||||||||    
T  36203307 cttcatcatcttcttgatgaagttattacagcagacc 36203343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 226 - 316
Target Start/End: Complemental strand, 2022721 - 2022631
Alignment:
Q  226 ctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgcagcagacctcctacacatgttctaaca 316  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||| |||| ||||    
T  2022721 ctttgaaatttatgtgcacatttcatcatgttcatcttcatcatcttcttgatcaagttattgcagcagacccccaacacaagttccaaca 2022631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 226 - 297
Target Start/End: Complemental strand, 43378199 - 43378128
Alignment:
Q  226 ctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgcagcagacc 297  Q
    ||||| |||||||||||||| |||||||| |||||||||||||||||  || ||||||||||||||||||||    
T  43378199 ctttgaaatttatgtgcacacttcatcatattcatcttcatcatcttcatggtcaagttattgcagcagacc 43378128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 153 - 254
Target Start/End: Original strand, 15205474 - 15205576
Alignment:
Q  153 tatacccttttgcattcggttggcttaattggtaggga-gaattgaacctaaatgttagtgtgtcccacacacgctttggaatttatgtgcacaattcat 251  Q
    |||||| |||||||| | || ||| ||| |||| |||| |||| |||||| || ||||||||||||||||||||||||| |||||||| ||||  |||||    
T  15205474 tataccattttgcatccagtcggcataactggtggggacgaatcgaacctcaaagttagtgtgtcccacacacgctttgaaatttatgggcactcttcat 15205573  T
Q  252 cat 254  Q
    |||    
T  15205574 cat 15205576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 440
Target Start/End: Original strand, 10558614 - 10558686
Alignment:
Q  368 aggaaaacaaacaagaaatctacttcatattcaccaacagttgaccaactagatatggtttcttaccaagact 440  Q
    ||||||| |||||||||| |  ||||| ||||||||| | |||||||||| | ||||||||||||||||||||    
T  10558614 aggaaaagaaacaagaaaccatcttcagattcaccaataattgaccaacttgctatggtttcttaccaagact 10558686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 440
Target Start/End: Complemental strand, 19606391 - 19606290
Alignment:
Q  339 tgctgcttattgtagctatctacttaacaaggaaaacaaacaagaaatctacttcatattcaccaacagttgaccaactagatatggtttcttaccaaga 438  Q
    |||| |||||||||||||||||||| |  || || | |||||| ||| |  ||||| ||||||||||| |||||||| ||  ||||||||| ||||||||    
T  19606391 tgcttcttattgtagctatctacttgaggagaaagagaaacaaaaaaccatcttcagattcaccaacaattgaccaattacctatggtttcctaccaaga 19606292  T
Q  439 ct 440  Q
    ||    
T  19606291 ct 19606290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 297
Target Start/End: Original strand, 35369365 - 35369406
Alignment:
Q  256 ttcatcttcatcatctttttgatcaagttattgcagcagacc 297  Q
    ||||||||||| |||||||||||||| |||||||||||||||    
T  35369365 ttcatcttcattatctttttgatcaaattattgcagcagacc 35369406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 160; Significance: 4e-85; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 11 - 316
Target Start/End: Original strand, 52653772 - 52654079
Alignment:
Q  11 atactaaatcagtctttcttttctctagtgcacaagagaatgtgacaaaactttattctgtaaaacaccattgtcgatacgcttggtgtgaatgtgcaaa 110  Q
    ||||||||||| |||| |||||||||||||||| ||  ||  ||||| ||||||||||||||||  |||||||||||||| |||| |||||||||||||     
T  52653772 atactaaatcattcttacttttctctagtgcacgaggaaaattgacagaactttattctgtaaactaccattgtcgatacacttgatgtgaatgtgcaag 52653871  T
Q  111 tcacattaagtattccatcgtatcttgaaggggattcgccggtataccc-ttttgcattcggttggcttaattggt-agggagaattgaacctaaatgtt 208  Q
    |||| | ||| ||||||| ||||| ||||||||||||||||||||| || |||||||| |||||||| ||| |||| |||| |||||||||||||| |||    
T  52653872 tcacgtcaaggattccattgtatcctgaaggggattcgccggtataaccattttgcatccggttggcataactggtgagggcgaattgaacctaaaggtt 52653971  T
Q  209 agtgtgtcccacacacgctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgcagcagacctcctacacatg 308  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||| ||| ||| |  ||||| |    
T  52653972 agtgtgtcccacacacgctttggaatttatgtgcacacttcatcatgttcattttcatcatcttcttgatcaagttattgccgcaaaccccaaacacagg 52654071  T
Q  309 ttctaaca 316  Q
    ||||||||    
T  52654072 ttctaaca 52654079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 11 - 317
Target Start/End: Original strand, 33709828 - 33710134
Alignment:
Q  11 atactaaatcagtctttcttttctctagtgcacaagagaatgtgacaaaactttattctgtaaaacaccattgtcgatacgcttggtgtgaatgtgcaaa 110  Q
    ||||||||||| ||||||||||||||||||||| ||||||| ||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||     
T  33709828 atactaaatcattctttcttttctctagtgcaccagagaatttgacagaactttattctgtaaactaccattgtcgatacgcttggtgtgaatgtgcaag 33709927  T
Q  111 tcacattaagtattccatcgtatcttgaaggggattcgccgg--tatacccttttgcattcggttggcttaattggtag-ggagaattgaacctaaatgt 207  Q
    |||| | ||| |||| |||||||| | ||||||||| |||||  ||||||||||||||| |||||| | ||| |||| | || |||| || |||||| ||    
T  33709928 tcacgtcaaggattctatcgtatcctaaaggggattagccggtatatacccttttgcatccggttgacataactggtggaggtgaatcgatcctaaaggt 33710027  T
Q  208 tagtgtgtcccacacacgctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgcagcagacctcctacacat 307  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||| || | ||||| || ||| ||||| |||||||||||||| || |||||     
T  33710028 tagtgtgtcccacacacgctttggaattta-gtgcacacttcatcatgttcttcat-atcattttcttggtcaagatattgcagcagacc-ccaacacag 33710124  T
Q  308 gttctaacag 317  Q
    ||||||||||    
T  33710125 gttctaacag 33710134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 8 - 297
Target Start/End: Complemental strand, 40574435 - 40574147
Alignment:
Q  8 ataatactaaatcagtctttcttttctctagtgcacaagagaatgtgacaaaactttattctgtaaaacaccattg-tcgatacgcttggtgtgaatgtg 106  Q
    |||||| ||||||| ||||||||||||||||||||| ||||||  ||||| ||||||||||||||||  | ||||| | ||||||||| |||||||||||    
T  40574435 ataatattaaatcattctttcttttctctagtgcacgagagaaattgacagaactttattctgtaaactatcattgattgatacgcttcgtgtgaatgtg 40574336  T
Q  107 caaatcacattaagtattccatcgtatcttgaaggggattcgccggtatacccttttgcattcggttggcttaattggt-agggagaattgaacctaaat 205  Q
    ||| |||| | ||  ||||||| ||||| ||||||  |||||| | ||| || |||||||| |  ||  | | | ||||  ||| ||||  | | ||||     
T  40574335 caagtcacgtcaaagattccatagtatcctgaaggtaattcgctgatatgccattttgcatccaattaacattactggtgggggtgaatcaagcttaaag 40574236  T
Q  206 gttagtgtgtcccacacacgctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgcagcagacc 297  Q
    |||||||||||||||| || |||  ||||||||||||||   || |||||||||| |||||||||||||| ||| ||||||||||| |||||    
T  40574235 gttagtgtgtcccacatacacttcagaatttatgtgcac---tcttcatgttcattttcatcatcttttttatcgagttattgcagaagacc 40574147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 218 - 297
Target Start/End: Original strand, 16729894 - 16729973
Alignment:
Q  218 cacacacgctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgcagcagacc 297  Q
    ||||||||||||| |||| ||||||||| || |||||||||||||||||| |||| ||||||||||||||||||||||||    
T  16729894 cacacacgctttgaaattaatgtgcacactttatcatgttcatcttcatcttcttattgatcaagttattgcagcagacc 16729973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 306
Target Start/End: Complemental strand, 49784255 - 49784174
Alignment:
Q  226 ctttggaatttatgtgcacaatt-catcatgttcatcttcatcatctttttgatcaagttattgcagcagacctcctacaca 306  Q
    |||||||||||||||||||| || |||||  ||||| ||||||||||| ||  |||||||||||||||||||| || |||||    
T  49784255 ctttggaatttatgtgcacactttcatcacattcatgttcatcatcttcttcgtcaagttattgcagcagacccccaacaca 49784174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 297
Target Start/End: Complemental strand, 29827190 - 29827119
Alignment:
Q  226 ctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgcagcagacc 297  Q
    ||||||||||||||| || | ||||||||  ||||||||||||| || ||| || |||||||||||||||||    
T  29827190 ctttggaatttatgttcaaacttcatcatagtcatcttcatcattttcttggtcgagttattgcagcagacc 29827119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 23686073 - 23686155
Alignment:
Q  53 tgacaaaactttattctgtaaaacaccattg-tcgatacgcttggtgtgaatgtgcaaatcacattaagtattccatcgtatc 134  Q
    |||||||| |||||||||||||  |||| || |||||| ||||||||||||||| |||||||| | ||| ||| |||||||||    
T  23686073 tgacaaaattttattctgtaaactaccaatgatcgatatgcttggtgtgaatgtccaaatcacgtcaagaatttcatcgtatc 23686155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 24058310 - 24058392
Alignment:
Q  53 tgacaaaactttattctgtaaaacaccattg-tcgatacgcttggtgtgaatgtgcaaatcacattaagtattccatcgtatc 134  Q
    |||||||| |||||||||||||  |||| || |||||| ||||||||||||||| |||||||| | ||| ||| |||||||||    
T  24058310 tgacaaaattttattctgtaaactaccaatgatcgatatgcttggtgtgaatgtccaaatcacgtcaagaatttcatcgtatc 24058392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 269
Target Start/End: Original strand, 23686167 - 23686244
Alignment:
Q  191 gaattgaacctaaatgttagtgtgtcccacacacgctttggaatttatgtgcacaattcatcatgttcatcttcatcat 269  Q
    |||||| | ||||| ||||| |||||||||||||| ||| ||||||| ||| ||| |||||||||||| || |||||||    
T  23686167 gaattggaactaaaggttagcgtgtcccacacacggtttcgaattta-gtgaacacttcatcatgttcttcatcatcat 23686244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 269
Target Start/End: Original strand, 24058404 - 24058481
Alignment:
Q  191 gaattgaacctaaatgttagtgtgtcccacacacgctttggaatttatgtgcacaattcatcatgttcatcttcatcat 269  Q
    |||||| | ||||| ||||| |||||||||||||| ||| ||||||| ||| ||| |||||||||||| || |||||||    
T  24058404 gaattggaactaaaggttagcgtgtcccacacacggtttcgaattta-gtgaacacttcatcatgttcttcatcatcat 24058481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 141; Significance: 9e-74; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 8 - 318
Target Start/End: Complemental strand, 12239744 - 12239432
Alignment:
Q  8 ataatactaaatcagtctttcttttctctagtgcacaagagaatgtgacaaaactttattctgtaaaacaccattgtcgatacgcttggtgtgaatgtgc 107  Q
    |||||| ||||| | |||||||| ||||||||  || ||| ||  |||||||||||||||||| |||  |||||||||||||||||||||||||||||||    
T  12239744 ataatattaaattattctttcttatctctagtatactagataaattgacaaaactttattctggaaactaccattgtcgatacgcttggtgtgaatgtgc 12239645  T
Q  108 aaatcacattaagtattccatcgtatcttgaaggggattcgccggtatacccttttgcattcggttgg-cttaattggtaggga-gaattgaacctaaat 205  Q
    || |||| | ||| ||| ||||||||| ||||||||||||||||  |||||||||||||| ||||| | | ||| |||| |||  |||| |||||||||     
T  12239644 aagtcacgtcaaggatttcatcgtatcctgaaggggattcgccgacatacccttttgcatccggtttgacataactggtgggggcgaatcgaacctaaag 12239545  T
Q  206 gttagtgtgtcccacacacgctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgcagcagacctcctacac 305  Q
    |||| |||||||||||||||||||| |||||||||||||| |||||||| |||||| |||||||||| || ||||||||||||||||| |||||| ||||    
T  12239544 gttaatgtgtcccacacacgctttgaaatttatgtgcacacttcatcatattcatcatcatcatcttcttaatcaagttattgcagcaaacctccaacac 12239445  T
Q  306 atgttctaacagt 318  Q
    | |||||||||||    
T  12239444 aagttctaacagt 12239432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 86 - 269
Target Start/End: Complemental strand, 23757212 - 23757029
Alignment:
Q  86 gatacgcttggtgtgaatgtgcaaatcacattaagtattccatcgtatcttgaaggggattcgccggtatacccttttgcattcggttggcttaattggt 185  Q
    |||||| |||||||||||||| |  |||| | |||  | ||||  |||||||||||||||||||| ||||||||||||||||  |||| |||||||||||    
T  23757212 gatacgtttggtgtgaatgtgaatgtcacgtcaagggtcccatattatcttgaaggggattcgccagtatacccttttgcatctggttagcttaattggt 23757113  T
Q  186 agggagaattgaacctaaatgttagtgtgtcccacacacgctttggaatttatgtgcacaattcatcatgttcatcttcatcat 269  Q
    |||| |||| ||||||||| |||||| |||| |||| |  ||| ||||||||||| |||  |||||||||||||||||||||||    
T  23757112 agggtgaatcgaacctaaaagttagtatgtcacacataaacttcggaatttatgttcactcttcatcatgttcatcttcatcat 23757029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 197 - 316
Target Start/End: Original strand, 37469063 - 37469182
Alignment:
Q  197 aacctaaatgttagtgtgtcccacacacgctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgcagcagac 296  Q
    |||||||| ||||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||||| |||||||||||||||| ||| ||    
T  37469063 aacctaaaggttagtgtgtcccacacacactttgaaatttatgtgcacatttaatcatgttcatcttcatcatcttcttgatcaagttattgctgcaaac 37469162  T
Q  297 ctcctacacatgttctaaca 316  Q
    | || ||||| |||||||||    
T  37469163 ccccaacacaggttctaaca 37469182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 8 - 316
Target Start/End: Original strand, 24870413 - 24870722
Alignment:
Q  8 ataatactaaatcagtctttcttttctctagtgcacaagagaatgtgacaaaactttattctgtaaaacaccattg-tcgatacgcttggtgtgaatgtg 106  Q
    |||||||||||| ||||||||||||||||||||||| ||| ||  ||| | ||||||||| ||||||  | ||||| || ||||||||||||| ||| ||    
T  24870413 ataatactaaataagtctttcttttctctagtgcacgagaaaaattgatagaactttattatgtaaactatcattgatcaatacgcttggtgtaaatatg 24870512  T
Q  107 caaatcacattaagtattccatcgtatcttgaaggggattcgccggtatacccttttgcattcggttggcttaattggtaggga-gaattgaacctaaat 205  Q
     || | || | ||  ||  ||| ||||| | | | ||||| |||   |||||||||||||| |||||||| ||| ||||||||  |||| |||| ||||     
T  24870513 aaagtaacgtcaataatatcatagtatcctaatgtggatttgccac-atacccttttgcatccggttggcataactggtaggggcgaatcgaacttaaag 24870611  T
Q  206 gttagtgtgtcccacacacgctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgcagcagacctcctacac 305  Q
    |||||  ||||||| ||| | | ||||||||||||| |  |||||||||||  |||||||||||||| || ||||||||||||||||| ||| || |||     
T  24870612 gttagcatgtcccatacaagatgtggaatttatgtgtattattcatcatgtctatcttcatcatcttcttcatcaagttattgcagcaaacccccaacat 24870711  T
Q  306 atgttctaaca 316  Q
    | |||||||||    
T  24870712 aggttctaaca 24870722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 5436972 - 5437036
Alignment:
Q  226 ctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgca 290  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||| ||| |||||||||||||    
T  5436972 ctttggaatttatttgcacacttcatcatgttcatcttcatcatcttcttggtcaagttattgca 5437036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 201 - 296
Target Start/End: Original strand, 1840839 - 1840931
Alignment:
Q  201 taaatgttagtgtgtcccacacacgctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgcagcagac 296  Q
    |||| |||||||| | |||||||| |||| || ||||||| |||  |||||||||||||   |||||||||  |||||||||||||||||||||||    
T  1840839 taaaggttagtgtattccacacacactttagattttatgtccacttttcatcatgttca---tcatcatctacttgatcaagttattgcagcagac 1840931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 243
Target Start/End: Original strand, 20464067 - 20464227
Alignment:
Q  84 tcgatacgcttggtgtgaatgtgcaaatcacattaagtattccatcgtatcttgaaggggattcgccggtatacccttttgcattcggttggcttaattg 183  Q
    |||||| ||||||||||||||||||| || | ||||| |||  |   ||| ||||| | |||| ||||||||||| |||| ||| || ||| | ||| |     
T  20464067 tcgatatgcttggtgtgaatgtgcaagtctcgttaaggattttaaaatattttgaaagagatttgccggtataccatttttcatccgattgacataacta 20464166  T
Q  184 gtaggga-gaattgaacctaaatgttagtgtgtcccacacacgctttggaatttatgtgca 243  Q
    || |||| |||| |||||||||  ||||| | ||| |||| ||||||||||||||| ||||    
T  20464167 gtggggacgaatcgaacctaaaaattagtatatcctacacgcgctttggaatttatatgca 20464227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 141; Significance: 9e-74; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 11 - 317
Target Start/End: Original strand, 49061372 - 49061679
Alignment:
Q  11 atactaaatcagtctttcttttctctagtgcacaagagaatgtgacaaaactttattctgtaaaacaccattgtcgatacgcttggtgtgaatgtgcaaa 110  Q
    ||||||||||| ||||||||||||||||||||| || |||  ||||||||||||||||||||||  ||||||||||||| | ||||||||||||||||||    
T  49061372 atactaaatcattctttcttttctctagtgcacgagggaaattgacaaaactttattctgtaaactaccattgtcgatatgtttggtgtgaatgtgcaaa 49061471  T
Q  111 tcacattaagtattccatcgtatcttgaaggggattcgccggtat-acccttttgcattcggttggcttaattggt-agggagaattgaacctaaatgtt 208  Q
    |||| | ||| ||||||| ||||  ||||||||||||| |||||| ||||||||||||   |||||| ||| ||||  ||| |||| |||||||||   |    
T  49061472 tcacgtcaaggattccattgtattctgaaggggattcgtcggtataacccttttgcatctagttggcataactggtgggggcgaatcgaacctaaagact 49061571  T
Q  209 agtgtgtcccacacacgctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgcagcagacctcctacacatg 308  Q
    ||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||| | || ||||||||||||||| || ||||| |    
T  49061572 agtgtttcccacacacgctttagaatttatgtgcacacttcatcatgttcatcttcttcatctttttggtaaaattattgcagcagacc-ccaacacaag 49061670  T
Q  309 ttctaacag 317  Q
    |||||||||    
T  49061671 ttctaacag 49061679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 49053792 - 49054079
Alignment:
Q  11 atactaaatcagtctttcttttctctagtgcacaagagaatgtgacaaaactttattctgtaaaacaccattgtcgatacgcttggtgtgaatgtgcaaa 110  Q
    ||||||||||| ||||||| ||||||||||||| || |||  || || ||||||||| ||||||  ||||||||||||| |||||||||||||||||||     
T  49053792 atactaaatcattctttctcttctctagtgcacgagggaaattggcagaactttattttgtaaactaccattgtcgatatgcttggtgtgaatgtgcaag 49053891  T
Q  111 tcacattaagtattccatcgtatcttgaaggggattcgccggtat-acccttttgcattcggttggcttaattggt-agggagaattgaacctaaatgtt 208  Q
    |||| | ||| ||| ||| ||||| |||||||||||||||||||| |||||||||||| | |||||  ||| ||||  ||| |||| ||||||||| |||    
T  49053892 tcacgtcaaggatttcattgtatcctgaaggggattcgccggtataacccttttgcatccagttggtataactggtgggggcgaatcgaacctaaaggtt 49053991  T
Q  209 agtgtgtcccacacacgctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgcagcagacc 297  Q
    ||||| |||||||||||| |||||||||||||| ||| |||||||||||||||||| ||||||||||| | || |||| ||||||||||    
T  49053992 agtgtttcccacacacgcattggaatttatgtgtacacttcatcatgttcatcttcttcatctttttggt-aaattatcgcagcagacc 49054079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 226 - 316
Target Start/End: Original strand, 21432107 - 21432197
Alignment:
Q  226 ctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgcagcagacctcctacacatgttctaaca 316  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||| ||| |||||||||||||||||||| || ||||| |||| ||||    
T  21432107 ctttggaatttatgtgcacacttcagcatgttcatcttcatcatcttcttggtcaagttattgcagcagacccccaacacaagttccaaca 21432197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 226 - 297
Target Start/End: Original strand, 44524460 - 44524531
Alignment:
Q  226 ctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgcagcagacc 297  Q
    |||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  44524460 ctttggaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttattgcaacagacc 44524531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 226 - 316
Target Start/End: Complemental strand, 35624779 - 35624689
Alignment:
Q  226 ctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgcagcagacctcctacacatgttctaaca 316  Q
    |||||||||||||||||||| ||| | || ||||||||||||||||| ||| |||||||||||||||||||| || ||||| |||||||||    
T  35624779 ctttggaatttatgtgcacacttcgtaatattcatcttcatcatcttcttggtcaagttattgcagcagacccccaacacaagttctaaca 35624689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 42263551 - 42263327
Alignment:
Q  8 ataatactaaatcagtctttcttttctctagtgcacaagagaatgtgacaaaactttattctgtaaaacaccattg-tcgatacgcttggtgtgaatgtg 106  Q
    ||||||||| |||| ||||||||||||||||||||| ||||||   ||||||||||| || ||||||  | ||||| ||||||||||| || ||||||||    
T  42263551 ataatactatatcattctttcttttctctagtgcacgagagaaatcgacaaaactttgttttgtaaattaacattgttcgatacgcttagtatgaatgtg 42263452  T
Q  107 caaatcacattaagtattccatcgtatcttgaaggggattcgccggtatacccttttgcattcggttggcttaattggtaggga-gaattgaacctaaat 205  Q
    ||| |||  | ||  |||  |  ||||| |||||||||||| ||| |||||| |||||||||  |||| | |||||||| || | ||   |||||||||     
T  42263451 caagtcatgtcaaagattttaaagtatcctgaaggggattcaccgttataccattttgcattttgttgacataattggtgggaacgagccgaacctaaag 42263352  T
Q  206 gttagtgtgtcccacacacgctttg 230  Q
    ||||||||||| |||||| ||||||    
T  42263351 gttagtgtgtctcacacatgctttg 42263327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 29681353 - 29681289
Alignment:
Q  226 ctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgca 290  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||| ||| |||||||||||||    
T  29681353 ctttggaatttatttgcacacttcatcatgttcatcttcatcatcttcttggtcaagttattgca 29681289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 48366493 - 48366557
Alignment:
Q  226 ctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgca 290  Q
    |||| |||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  48366493 ctttcgaatttatttgcacacttcatcatgttcatcttcatcatcttcttgatcaagttattgca 48366557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 52282135 - 52282031
Alignment:
Q  8 ataatactaaatcagtctttcttttctctagtgca--caagagaatgtgacaaaactttattctgtaaaacaccattg-tcgatacgcttggtgtgaatg 104  Q
    |||||| ||||||| ||||||||||||||||||||    ||||||  ||||| ||||||||||||||||  ||||||| ||||| ||||||||||||||     
T  52282135 ataatattaaatcattctttcttttctctagtgcatgagagagaaattgacataactttattctgtaaactaccattgatcgatgcgcttggtgtgaata 52282036  T
Q  105 tgcaa 109  Q
    |||||    
T  52282035 tgcaa 52282031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 231 - 316
Target Start/End: Complemental strand, 19310606 - 19310521
Alignment:
Q  231 gaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgcagcagacctcctacacatgttctaaca 316  Q
    ||||||||||||||| |||||||| | |||||| |||||||| ||  | ||||||||| ||||||||| | ||||| |||||||||    
T  19310606 gaatttatgtgcacacttcatcatatacatctttatcatcttcttagttaagttattgtagcagaccttcaacacaagttctaaca 19310521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 297
Target Start/End: Original strand, 10187018 - 10187089
Alignment:
Q  226 ctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgcagcagacc 297  Q
    ||||| |||||||||||||  ||||||||  |||| || |||||||| ||||||||||||||| ||||||||    
T  10187018 ctttgtaatttatgtgcacgcttcatcatagtcatatttatcatcttcttgatcaagttattgtagcagacc 10187089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 291
Target Start/End: Complemental strand, 43358511 - 43358448
Alignment:
Q  228 ttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgcag 291  Q
    |||||||| ||||||||  ||||||||  |||||||||||||||| |||||||| |||||||||    
T  43358511 ttggaattcatgtgcacgcttcatcatagtcatcttcatcatcttcttgatcaatttattgcag 43358448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 50059489 - 50059555
Alignment:
Q  8 ataatactaaatcagtctttcttttctctagtgcacaagagaatgtgacaaaactttattctgtaaa 74  Q
    |||||||| ||||| ||||| ||||||||||||||| ||||||  | ||| ||||||||||| ||||    
T  50059489 ataatactgaatcattctttattttctctagtgcacgagagaaatttacagaactttattctataaa 50059555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 1187591 - 1187551
Alignment:
Q  247 ttcatcatgttcatcttcatcatctttttgatcaagttatt 287  Q
    |||||||| |||| |||||||||||| ||||||||||||||    
T  1187591 ttcatcatattcaccttcatcatcttcttgatcaagttatt 1187551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 11 - 264
Target Start/End: Original strand, 12729389 - 12729644
Alignment:
Q  11 atactaaatcagtctttcttttctctagtgcacaagagaatgtgacaaaactttattctgtaaaacaccattgtcgatacgcttggtgtgaatgtgcaaa 110  Q
    ||||||||| | ||||||||||||||||||||| ||||||  ||||| |||||||||| |||||  || |||||||||| |||||||||||||||||||     
T  12729389 atactaaataattctttcttttctctagtgcacgagagaaattgacagaactttattcagtaaactacaattgtcgatatgcttggtgtgaatgtgcaag 12729488  T
Q  111 tcacattaagtattccatcgtatcttgaaggggattcgccggtat-acccttttgcattcggttggcttaattggtag-ggagaattgaacctaaatgtt 208  Q
    |||  | ||| ||| ||||||||| ||||||||| |||||||||| |||||||||||| |||||||| ||| |||| | || |||| | ||||||| |||    
T  12729489 tcatgtcaaggatttcatcgtatcctgaaggggaatcgccggtataacccttttgcatccggttggcataactggtggaggcgaatcgtacctaaaggtt 12729588  T
Q  209 agtgtgtcccacacacgctttggaatttatgtgcacaattcatcatgttcatcttc 264  Q
    |||||||||||||||| |||||||||| ||||| ||  ||||||||||||||||||    
T  12729589 agtgtgtcccacacactctttggaattcatgtgtacttttcatcatgttcatcttc 12729644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 8 - 293
Target Start/End: Original strand, 44729074 - 44729364
Alignment:
Q  8 ataatactaaatcagtctttcttttctctagtgcacaagagaatgtgacaaaactttattctgtaaaacaccattg-tcgatacgcttggtgtgaatgtg 106  Q
    |||||| ||| ||| |||||| |||| ||||||||| |||||   ||||||  ||  ||||||||||  | ||||| |||||||||||||| ||||||||    
T  44729074 ataatattaagtcattctttcatttccctagtgcacgagagagattgacaa--ctacattctgtaaactatcattgatcgatacgcttggtatgaatgtg 44729171  T
Q  107 caaatcacattaagtattccatcgtatcttgaaggggattcgccggtat-acccttttgcattcggttggcttaattggtaggga-gaattgaacctaaa 204  Q
    ||| |||| | ||| ||||||  ||||| | |||||||||||||||||| ||||| |||||| |||||||| ||| | | ||||  ||||||||| ||||    
T  44729172 caagtcacgtcaaggattccaatgtatcctaaaggggattcgccggtattaccctcttgcatccggttggcataactcgcaggggtgaattgaacataaa 44729271  T
Q  205 tgttagtgtgtcccacacacgctttggaatttatgtgcacaattca----tcatgttcatcttcatcatctttttgatcaagttattgcagca 293  Q
     |||||||| ||||||||||||||||||||||||||||||  ||||    |||||||||| ||||| ||||| ||||||||||||||| ||||    
T  44729272 ggttagtgtatcccacacacgctttggaatttatgtgcactcttcatcattcatgttcattttcattatcttcttgatcaagttattgtagca 44729364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 152 - 290
Target Start/End: Complemental strand, 28696095 - 28695956
Alignment:
Q  152 gtatacccttttgcattcggttggcttaattggt-agggagaattgaacctaaatgttagtgtgtcccacacacgctttggaatttatgtgcacaattca 250  Q
    ||||||||||||||||  ||||| | ||| |||| |||| ||||  |||||||| |||||||||||||||||||||||||||||||||| |||   ||||    
T  28696095 gtatacccttttgcatctggttgacataactggtgagggcgaatcaaacctaaaagttagtgtgtcccacacacgctttggaatttatgcgcattcttca 28695996  T
Q  251 tcatgttcatcttcatcatctttttgatcaagttattgca 290  Q
    |||||||||| ||||||||||| ||| |||||||||||||    
T  28695995 tcatgttcatattcatcatcttcttggtcaagttattgca 28695956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 226 - 316
Target Start/End: Original strand, 25953601 - 25953691
Alignment:
Q  226 ctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgcagcagacctcctacacatgttctaaca 316  Q
    ||||| |||||||||||||| |||||||| ||||||||||| ||||| ||| | ||||||||||| |||||| || ||||| ||| |||||    
T  25953601 ctttgaaatttatgtgcacacttcatcatattcatcttcattatcttcttggttaagttattgcatcagacccccaacacaagttgtaaca 25953691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 14546399 - 14546298
Alignment:
Q  8 ataatactaaatcagtctttcttttctctagtgcacaagagaatgtgacaaaactttattctgtaaaacaccattg-tcgatacgcttggtgtgaatgtg 106  Q
    |||||||||||||| ||||||||||||||| || |  ||||||  ||||| ||||||| | ||||||  ||||||| |||||| | ||||||||||||||    
T  14546399 ataatactaaatcattctttcttttctctaatgaatcagagaaattgacataactttagtatgtaaagtaccattgatcgata-gtttggtgtgaatgtg 14546301  T
Q  107 caa 109  Q
    |||    
T  14546300 caa 14546298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 8 - 244
Target Start/End: Original strand, 11931950 - 11932187
Alignment:
Q  8 ataatactaaatcagtctttcttttctctagtgcacaagagaatgtgacaaaactttattctgtaaaacaccattgtcgatacgcttggtgtgaatgtgc 107  Q
    ||||||||| |||| |||||||||| |||||||||| ||||||| ||||| || |||||||| ||||  |||||||||||||  ||||||||||||  ||    
T  11931950 ataatactatatcattctttcttttatctagtgcacgagagaatttgacagaattttattctataaactaccattgtcgataaacttggtgtgaataagc 11932049  T
Q  108 aaatcacattaagtattccatcgtatcttgaaggggattcgccggtat-acccttttgcattcggttggcttaattggt-agggagaattgaacctaaat 205  Q
    || |||||| ||| ||| ||||||||| |||||||| ||||| ||||| |||||||||||| |||||||| ||| | ||  ||| ||||  ||||||||     
T  11932050 aagtcacatcaaggatttcatcgtatcctgaagggg-ttcgctggtataacccttttgcatccggttggcataactagtgggggcgaatcaaacctaaag 11932148  T
Q  206 gttagtgtgtcccacacacgctttggaatttatgtgcac 244  Q
    |||||||||||| ||||| |||||| |||||||||||||    
T  11932149 gttagtgtgtccaacacatgctttgaaatttatgtgcac 11932187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 293
Target Start/End: Complemental strand, 28612264 - 28611983
Alignment:
Q  11 atactaaatcagtctttcttttctctagtgcacaagagaatgtgacaaaactttattctgtaaaacaccattgt-cgatacgcttggtgtgaatgtgcaa 109  Q
    ||||||||||| |||||||| |||||||||||| || | |  ||||| ||| || || |||| |  |||||||  ||||| ||||||||||||||| |||    
T  28612264 atactaaatcattctttcttatctctagtgcacgaggggaattgacagaacattgttttgtatactaccattgaacgatatgcttggtgtgaatgtacaa 28612165  T
Q  110 atcacattaagtattccatcgtatcttgaaggggattcgccggtatacccttttgcattcggttggcttaattggtagggagaatt-gaacctaaatgtt 208  Q
     |||| | ||| ||||||| ||||  |||||||||||||||| |||||| |||| ||| | |||| | ||| |||| |||| || | ||||||||| |||    
T  28612164 gtcacgtcaaggattccattgtattctgaaggggattcgccgatataccattttacatactgttgacataactggtggggaaaaatcgaacctaaaggtt 28612065  T
Q  209 agtgtgtcccacacacgctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgcagca 293  Q
    | ||||| ||||||||  |||  |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||    
T  28612064 a-tgtgttccacacac--tttaaaatttatgtgcacacttcatcatgttcatattcatcatcttcttgatcaagttattgcagca 28611983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 200 - 316
Target Start/End: Complemental strand, 24075735 - 24075619
Alignment:
Q  200 ctaaatgttagtgtgtcccacacacgctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgcagcagacctc 299  Q
    |||||| ||||| |||  || ||| |||||||||||||| |||||| ||  |||| |||||||| |||||||| || ||||||||||||||||||||| |    
T  24075735 ctaaattttagtttgtttcatacatgctttggaatttatatgcacactttgtcatattcatctttatcatcttcttaatcaagttattgcagcagacccc 24075636  T
Q  300 ctacacatgttctaaca 316  Q
      ||||| |||||||||    
T  24075635 taacacaggttctaaca 24075619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 226 - 287
Target Start/End: Complemental strand, 21937332 - 21937271
Alignment:
Q  226 ctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttatt 287  Q
    ||||| |||||||||||||| |||||||| ||||||||||||||||| ||| ||||||||||    
T  21937332 ctttgtaatttatgtgcacacttcatcatattcatcttcatcatcttcttggtcaagttatt 21937271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 297
Target Start/End: Original strand, 24509270 - 24509341
Alignment:
Q  226 ctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgcagcagacc 297  Q
    ||||| ||||||| |||| | ||||||||  |||||||||||||||| ||| ||||||| ||||||||||||    
T  24509270 ctttgaaatttatttgcaaacttcatcatactcatcttcatcatcttcttggtcaagtttttgcagcagacc 24509341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 6e-41; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 11 - 175
Target Start/End: Original strand, 24391833 - 24391997
Alignment:
Q  11 atactaaatcagtctttcttttctctagtgcacaagagaatgtgacaaaactttattctgtaaaacaccattgtcgatacgcttggtgtgaatgtgcaaa 110  Q
    ||||||||||| ||||||||||||||||||||  ||||||  ||||| ||||||||||||||||  | ||||||||||||| |||||||| ||||||||     
T  24391833 atactaaatcattctttcttttctctagtgcatgagagaaattgacataactttattctgtaaactatcattgtcgatacgtttggtgtg-atgtgcaag 24391931  T
Q  111 tcacattaagtattccatcgtatcttgaaggggattcgccggtat-acccttttgcattcggttgg 175  Q
    |||||  ||| ||||||| |||||||||||||||||||||||||| |||||||||||| |||||||    
T  24391932 tcacaccaaggattccattgtatcttgaaggggattcgccggtataacccttttgcatccggttgg 24391997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 8 - 269
Target Start/End: Complemental strand, 48779981 - 48779718
Alignment:
Q  8 ataatactaaatcagtctttcttttctctagtgcacaagagaatgtgacaaaactttattctgtaaaacaccattg-tcgatacgcttggtgtgaatgtg 106  Q
    |||||| ||||||| || || ||||||||||||||| | | ||  ||||| ||||||||||| ||||  | ||||| | |||| ||||||||||||||||    
T  48779981 ataatattaaatcattcattattttctctagtgcacgacataaactgacataactttattctctaaactatcattgattgatatgcttggtgtgaatgtg 48779882  T
Q  107 caaatcacattaagtattccatcgtatcttgaaggggattcgccggtatacccttttgcattcggttggcttaattggtag-ggagaattgaacctaaat 205  Q
    ||| |||| | ||  ||| ||| ||||| |||||||||||| ||| ||||||||||||||| |  ||||| ||| ||| || || |||| |||| ||||     
T  48779881 caagtcacgtcaatgatttcatagtatcctgaaggggattcaccgatatacccttttgcatccaattggcataactggcagaggcgaatcgaacataaag 48779782  T
Q  206 gttagtgtgtcccacacacgctttggaatttatgtgcacaattcatcatgttcatcttcatcat 269  Q
    |||||||| |||||||||||||||| ||||||| |||||| ||||||||||||||||| |||||    
T  48779781 gttagtgtatcccacacacgctttgaaatttatatgcacacttcatcatgttcatctttatcat 48779718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 10 - 297
Target Start/End: Original strand, 20251407 - 20251696
Alignment:
Q  10 aatactaaatcagtctttcttttctctagtgcacaagagaatgtgacaaaactttattctgtaaaacaccattg-tcgatacgcttggtgtgaatgtgca 108  Q
    |||||||||||| | |||||||||| |||||||| ||||||  ||||| ||||||||| ||||||  | ||||| ||||||| |||| ||||||||| ||    
T  20251407 aatactaaatcattatttcttttctgtagtgcacgagagaaattgacagaactttattatgtaaactatcattgatcgatacacttgatgtgaatgtaca 20251506  T
Q  109 aatcacattaagtattccatcgtatcttgaa-ggggattcgccggtatacccttttgcattcggttggcttaattggta-gggagaattgaacctaaatg 206  Q
    |  ||||| ||  |||| ||| |||| |||| |||||||| || |||||||| ||||||| |||||| | | | | ||| |||  ||| ||| ||||||     
T  20251507 aggcacatcaatgattcaatcatatcctgaagggggattcaccagtatacccctttgcatccggttgacattactagtaggggcaaatggaatctaaata 20251606  T
Q  207 ttagtgtgtcccacacacgctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgcagcagacc 297  Q
    ||||||||| | |||||||||||| |||||||||| ||  |||||||||||||||||||||||||| ||  ||||  |||| |||||||||    
T  20251607 ttagtgtgt-ctacacacgctttgaaatttatgtgtactcttcatcatgttcatcttcatcatcttcttagtcaaactattacagcagacc 20251696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 226 - 316
Target Start/End: Original strand, 3415594 - 3415684
Alignment:
Q  226 ctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgcagcagacctcctacacatgttctaaca 316  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||| || ||||| |||| ||||    
T  3415594 ctttggaatttatgtgcacacttcatcatgttcatcttcatcatcttcttggtcaagttattgcagcagacccccaacacaagttccaaca 3415684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 226 - 295
Target Start/End: Original strand, 3425142 - 3425211
Alignment:
Q  226 ctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgcagcaga 295  Q
    |||||||||||||||||||| || ||||||||||||||||||||||| ||| ||||||||||||||||||    
T  3425142 ctttggaatttatgtgcacactttatcatgttcatcttcatcatcttcttggtcaagttattgcagcaga 3425211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 226 - 306
Target Start/End: Complemental strand, 18736921 - 18736841
Alignment:
Q  226 ctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgcagcagacctcctacaca 306  Q
    |||||||||||||||||||| ||||||| ||||||||| |||||||| |||| ||||||||| ||||||||| || |||||    
T  18736921 ctttggaatttatgtgcacacttcatcaagttcatcttaatcatcttcttgaccaagttattacagcagacccccaacaca 18736841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 211 - 315
Target Start/End: Complemental strand, 24129245 - 24129141
Alignment:
Q  211 tgtgtcccacacacgctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgcagcagacctcctacacatgtt 310  Q
    |||||||| |||| ||||||||||||||||||||  |||||||| |||||| |||||  ||| |||||||| |||||  ||| ||||||| |||||||||    
T  24129245 tgtgtcccgcacatgctttggaatttatgtgcacttttcatcatattcatcatcatcgccttcttgatcaaattattatagctgacctccaacacatgtt 24129146  T
Q  311 ctaac 315  Q
    |||||    
T  24129145 ctaac 24129141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 226 - 296
Target Start/End: Complemental strand, 18670603 - 18670533
Alignment:
Q  226 ctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgcagcagac 296  Q
    ||||| |||||||||||||| ||||||||||||||||| |||||||| ||| ||||||||||||| |||||    
T  18670603 ctttgaaatttatgtgcacacttcatcatgttcatctttatcatcttcttggtcaagttattgcaacagac 18670533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 226 - 316
Target Start/End: Complemental strand, 18716248 - 18716158
Alignment:
Q  226 ctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgcagcagacctcctacacatgttctaaca 316  Q
    ||||||||||||||| |||| ||||||| ||||||||| |||||||| |||  ||||||||| ||||||||| || ||||| |||| ||||    
T  18716248 ctttggaatttatgtacacacttcatcaagttcatcttaatcatcttcttggccaagttattacagcagacccccaacacaagttccaaca 18716158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 30020297 - 30020361
Alignment:
Q  231 gaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgcagcaga 295  Q
    |||||||| |||||| ||||||||  |||||||||||||||| ||| ||||||||||||||||||    
T  30020297 gaatttatatgcacacttcatcatagtcatcttcatcatcttcttggtcaagttattgcagcaga 30020361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 226 - 282
Target Start/End: Original strand, 32429726 - 32429782
Alignment:
Q  226 ctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaag 282  Q
    |||| ||||||||||||||| |||||||||||||||||||||||| | |||||||||    
T  32429726 ctttagaatttatgtgcacacttcatcatgttcatcttcatcatcatcttgatcaag 32429782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 47078155 - 47078091
Alignment:
Q  10 aatactaaatcagtctttcttttctctagtgcacaagagaatgtgacaaaactttattctgtaaa 74  Q
    |||||||||||| |||||||||| | ||||| || ||||||  ||||| ||||||||||||||||    
T  47078155 aatactaaatcattctttcttttttgtagtgtacgagagaaattgacagaactttattctgtaaa 47078091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 24129464 - 24129398
Alignment:
Q  8 ataatactaaatcagtctttcttttctctagtgcacaagagaatgtgacaaaactttattctgtaaa 74  Q
    |||||||||||||  |||||||||||||||||||||   ||||  ||||| ||||||||| ||||||    
T  24129464 ataatactaaatctttctttcttttctctagtgcacggaagaaattgacataactttattatgtaaa 24129398  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 27538214 - 27538148
Alignment:
Q  8 ataatactaaatcagtctttcttttctctagtgcacaagagaatgtgacaaaactttattctgtaaa 74  Q
    |||||||||||||| |||||  |||||||| |||| |||||||  ||||| ||||| ||||||||||    
T  27538214 ataatactaaatcattctttaatttctctaatgcataagagaaattgacataacttaattctgtaaa 27538148  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 297
Target Start/End: Complemental strand, 47071168 - 47071122
Alignment:
Q  251 tcatgttcatcttcatcatctttttgatcaagttattgcagcagacc 297  Q
    |||||||||||||||||||||| ||  ||||||||||| ||||||||    
T  47071168 tcatgttcatcttcatcatcttcttagtcaagttattgtagcagacc 47071122  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 52984475 - 52984537
Alignment:
Q  105 tgcaaatcacattaagtattccatcgtatcttgaaggggattcgccggtatacccttttgcat 167  Q
    |||||||||||| |||  |||||  ||||| | |||||||||||||||||||||| |||||||    
T  52984475 tgcaaatcacatcaagatttccaaagtatccttaaggggattcgccggtatacccgtttgcat 52984537  T

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Target: scaffold0007 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 8 - 290
Target Start/End: Original strand, 217744 - 218017
Alignment:
Q  8 ataatactaaatcagtctttcttttctctagtgcacaagagaatgtgacaaaactttattctgtaaaacaccattg-tcgatacgcttggtgtgaatgtg 106  Q
    ||||| |||||| | ||||||||||||||||| ||| ||||||  || || ||| ||||| ||||||  ||||||| ||||||| |||||||||||||||    
T  217744 ataattctaaataattctttcttttctctagttcacgagagaaattggcagaacattattttgtaaactaccattgatcgatacacttggtgtgaatgtg 217843  T
Q  107 caaatcacattaagtattccatcgtatcttgaaggggattcgccggtatacccttttgcattcggttggcttaattggtaggg-agaattgaacctaaat 205  Q
    ||| || | | ||| ||| ||||||||         |||||||||||||||||||||| ||  ||||||| ||  |||| ||| ||||| || ||||||     
T  217844 caagtctcttcaaggatttcatcgtatt--------gattcgccggtatacccttttgtatcaggttggcatagctggtgggggagaatcgatcctaaag 217935  T
Q  206 gttagtgtgtcccacacacgctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgca 290  Q
    || ||| ||||||||||||  |||||||||||||||||| |||||| |||||||||||||||||||||||  |||||||||||||    
T  217936 gt-agtttgtcccacacac--tttggaatttatgtgcactattcattatgttcatcttcatcatcttttttgtcaagttattgca 218017  T

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Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 272
Target Start/End: Complemental strand, 14219007 - 14218742
Alignment:
Q  8 ataatactaaatcagtctttcttttctctagtgcacaagagaatgtgacaaaactttattctgtaaaacaccattg-tcgatacgcttggtgtgaatgtg 106  Q
    |||||||||||||| ||||||||||||||||||||| ||  ||  ||| | ||||||||| ||||||  | ||||| | |||||| |||||||||||||     
T  14219007 ataatactaaatcattctttcttttctctagtgcacgaggaaaattgaaagaactttattttgtaaactatcattgatggatacgtttggtgtgaatgta 14218908  T
Q  107 caaatcacattaagt-attccatcgtatcttgaaggggattcgccggtatacccttttgcattcggttggcttaattggtagggagaattgaacctaaat 205  Q
    ||  ||| | | ||| |||| || |||||||||||| |||||   | ||||| ||||||||| | |||| | ||| |||| ||  |||| |||||||||     
T  14218907 catgtca-agtcagtgattctatagtatcttgaaggagattcattgatatactcttttgcatccagttgacataactggtgggacgaatcgaacctaaaa 14218809  T
Q  206 gttagtgtgtcccacacacgctttggaatttatgtgcacaattcatcatgttcatcttcatcatctt 272  Q
    |||||| ||||  |||||| ||||  |||||||||||||   |||||||||||| ||||||||||||    
T  14218808 gttagtttgtctaacacacacttttaaatttatgtgcacttgtcatcatgttcaccttcatcatctt 14218742  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 247 - 311
Target Start/End: Original strand, 8367467 - 8367531
Alignment:
Q  247 ttcatcatgttcatcttcatcatctttttgatcaagttattgcagcagacctcctacacatgttc 311  Q
    |||||||||||||||||||||||| |||| ||||||||| ||||||| |||||||||||| ||||    
T  8367467 ttcatcatgttcatcttcatcatcgttttcatcaagttactgcagcaaacctcctacacaagttc 8367531  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 247 - 297
Target Start/End: Complemental strand, 42779936 - 42779886
Alignment:
Q  247 ttcatcatgttcatcttcatcatctttttgatcaagttattgcagcagacc 297  Q
    ||||| |||||||||||||||||||| ||| ||||||||||||||||||||    
T  42779936 ttcattatgttcatcttcatcatcttcttggtcaagttattgcagcagacc 42779886  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 299
Target Start/End: Complemental strand, 716123 - 716051
Alignment:
Q  226 ctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaagttattgcagcagacctc 299  Q
    |||| ||||||||||| ||  |||||||| ||||| ||||||||||| ||| ||||||||||||||||||||||    
T  716123 ctttagaatttatgtgtacgcttcatcatattcat-ttcatcatcttcttggtcaagttattgcagcagacctc 716051  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 264
Target Start/End: Complemental strand, 34681209 - 34680971
Alignment:
Q  23 tctttcttttctctagtgcacaagagaatgtgacaaaactttattctgtaaaacaccattg-tcgatacgcttggtgtgaatgtgcaaatcacattaagt 121  Q
    |||||||||||||| ||| || ||||||  |||||||||||||||  |||||  | ||||| |||||||||||| ||||||||||||| ||     |||     
T  34681209 tctttcttttctctggtgaacgagagaaattgacaaaactttattacgtaaactatcattgatcgatacgcttgatgtgaatgtgcaagtc-----aaga 34681115  T
Q  122 attccatcgtatcttgaaggggattcgccggtatacccttttgcattcggttggcttaattggtagggag--aattgaacctaaatgttagtgtgtccca 219  Q
    ||| ||| ||||| ||||  ||||||||   |||| |||||||||    |||||| ||| || | |||||  ||| ||||||||| ||||||||  ||||    
T  34681114 atttcatagtatcctgaaaaggattcgcttatatatccttttgcacctagttggcataactgat-gggagcaaatcgaacctaaaagttagtgtacccca 34681016  T
Q  220 cacacgctttggaatttatgtgcacaattcatcatgttcatcttc 264  Q
    |||| |||||  |||| |||||||   ||||||||||||||||||    
T  34681015 cacatgcttttaaattcatgtgcagtcttcatcatgttcatcttc 34680971  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 297
Target Start/End: Complemental strand, 16272183 - 16272133
Alignment:
Q  247 ttcatcatgttcatcttcatcatctttttgatcaagttattgcagcagacc 297  Q
    ||||||||||||||||| |||||||| ||  ||||||||||||||||||||    
T  16272183 ttcatcatgttcatctttatcatcttcttagtcaagttattgcagcagacc 16272133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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