View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13115_high_6 (Length: 409)
Name: NF13115_high_6
Description: NF13115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13115_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 13 - 391
Target Start/End: Original strand, 35993639 - 35994017
Alignment:
| Q |
13 |
atgtagcaaagacaaacctgacaagtccatctggagaagtataaacaccttttccttgagcaatatcatcccaaagagttccttcatatctaaaaattta |
112 |
Q |
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| T |
35993639 |
atgtagcaaagacaaacctgacaagtccatctggagaagtataaacaccttttccttgagcaatatcatcccaaagagttccttcatatctaaaaattta |
35993738 |
T |
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| Q |
113 |
gcaacacaaaacattaatgaataacaaacaaaaccagtatttacaatcgcagcaggcagaaaataggcatttgtttaaattcttctacgtaacactacta |
212 |
Q |
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| T |
35993739 |
gcaacacaaaacattaatgaataacaaacaaaaccagtatttacaatcgcagcaggcagaaaataggcatttgtttaaattcttctacgtaacactacta |
35993838 |
T |
|
| Q |
213 |
cagtgccaccatttgacaatattgtactaaacaccttattgcataacaataactatttgcttaaattccaccttgctatagcctctatttaccaacactg |
312 |
Q |
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| T |
35993839 |
cagtgccaccatttgacaatattgtactaaacaccttattgcataacaataactatttgcttaaattccaccttgctatagcctctatttaccaacactg |
35993938 |
T |
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| Q |
313 |
aacaaaacagagacaaactatgagtaaaccaccaaactagtctcttactttgtaggatgctctcaaacatgtccctaag |
391 |
Q |
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| T |
35993939 |
aacaaaacagagacaaactatgagtaaaccaccaaactagtctcttactttgtaggatgctctcaaacatgtccctaag |
35994017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 9757330 - 9757435
Alignment:
| Q |
19 |
caaagacaaacctgacaagtccatctggagaagtataaacacc--ttttccttgagcaatatcatcccaaagagttccttcatatctaaaaatttagcaa |
116 |
Q |
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| T |
9757330 |
caaagacaaacctgacaagcccaatttaagaagcataaacaccttttttccttgagcaatatcataccaaa-aatgccttcataactaaaaatttagcat |
9757428 |
T |
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| Q |
117 |
cacaaaa |
123 |
Q |
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||||||| |
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| T |
9757429 |
cacaaaa |
9757435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 378
Target Start/End: Original strand, 9710037 - 9710081
Alignment:
| Q |
334 |
gagtaaaccaccaaactagtctcttactttgtaggatgctctcaa |
378 |
Q |
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| T |
9710037 |
gagtaaaccaccaaattagtctctgactttgtaagacgctctcaa |
9710081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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