View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13115_high_7 (Length: 359)
Name: NF13115_high_7
Description: NF13115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13115_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 25 - 350
Target Start/End: Original strand, 39275178 - 39275508
Alignment:
| Q |
25 |
catatattccatagcttcagaatgagttacagataacattgatcatatatatgaagcaccatttataatcagggcaacttattaaaatatgaaaacagca |
124 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
39275178 |
catatatttcatagcttcagaatgagttacagataacattgatcatatataggaagcaccatttataatcagggcaaattattaaaatatgaaaacagca |
39275277 |
T |
|
| Q |
125 |
aacaaagcacacaatttattgatactcgat-----ccagaggtagtaacggtaaccaagcaagcatgcgcatattagacccccttgagtgtccaattgac |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39275278 |
aacaaagcacacaatttattgatactcgatccgatccagaggtagtaacagtaaccaagcaagcatgcgcatgttagacccccttgagtgtccaattgac |
39275377 |
T |
|
| Q |
220 |
tttgtgacttccatgaccatgaccataaccatgaggcttaatcctgttgttattattgtatccatatggattagcatagtgaacatctcctccatatgtt |
319 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39275378 |
tttgtgacttccatgaccatgaccatgaccatgaggcttaatcctgttgttattattgtatccatatggattagcatagtgaacatctcctccatatgtt |
39275477 |
T |
|
| Q |
320 |
ccatgacgctcatatctcatctcattcatct |
350 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |
|
|
| T |
39275478 |
ccatgacgctcatatctcatctcatccatct |
39275508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University