View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13115_low_1 (Length: 633)

Name: NF13115_low_1
Description: NF13115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13115_low_1
NF13115_low_1
[»] chr3 (8 HSPs)
chr3 (176-455)||(19246351-19246637)
chr3 (188-455)||(17663850-17664114)
chr3 (16-190)||(17664155-17664329)
chr3 (16-116)||(19246636-19246736)
chr3 (530-620)||(19246186-19246276)
chr3 (530-620)||(17663531-17663621)
chr3 (16-106)||(23332244-23332330)
chr3 (367-447)||(898918-898998)
[»] chr2 (1 HSPs)
chr2 (307-455)||(33137629-33137777)
[»] chr1 (17 HSPs)
chr1 (378-448)||(45526202-45526272)
chr1 (371-445)||(35203174-35203248)
chr1 (367-448)||(35295189-35295270)
chr1 (371-445)||(35476988-35477062)
chr1 (378-443)||(8640315-8640380)
chr1 (371-448)||(35216965-35217042)
chr1 (367-455)||(35222778-35222866)
chr1 (379-450)||(35272922-35272993)
chr1 (378-448)||(35206425-35206495)
chr1 (378-448)||(35213583-35213653)
chr1 (546-596)||(35228634-35228684)
chr1 (371-444)||(35192834-35192907)
chr1 (372-445)||(45534400-45534473)
chr1 (379-447)||(35228446-35228514)
chr1 (371-448)||(35145221-35145298)
chr1 (530-596)||(35273052-35273118)
chr1 (379-440)||(35265360-35265421)


Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 176 - 455
Target Start/End: Complemental strand, 19246637 - 19246351
Alignment:
Q  176 atatggcatcgcttaatgagggtaacaagaacaatcgaaagacatagaaaataaaatcactttaaatggtgaatttctagtcacgagactacataccgtt 275  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  19246637 atatggcatcgcttaatgagggtaacaagaccaatcaaaagacatagaaaataaaatcactttaaatggtgaatttctagtcacgagactacgtaccctt 19246538  T
Q  276 nnnnnnnta-------cagtttaaagaaaaactgaaaataaagaactaacctagaatcatgcatgggaatccactctttctcaccgtccacgttacgaca 368  Q
            |       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19246537 aaaaaaaaaaaacacacagtttaaagaaaaactgaaaataaagaactaacctagaatcatgcatgggaatccactctttctcaccgtccacgttacgaca 19246438  T
Q  369 atcaatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaacatatac 455  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19246437 atcaatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaacatatac 19246351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 188 - 455
Target Start/End: Complemental strand, 17664114 - 17663850
Alignment:
Q  188 ttaatgagggtaacaagaacaatcgaaagacatagaaaataaaatcactttaaatggtgaatttctagtcacgagactacataccgttnnnnnnntacag 287  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||        ||||    
T  17664114 ttaatgagggtaacaagaccaatcgaaagacatagaaaataaaatcactttaaatggtgaatttctagtcacgagactacgtacccttaaaac---acag 17664018  T
Q  288 tttaaagaaaaactgaaaataaagaactaacctagaatcatgcatgggaatccactctttctcaccgtccacgttacgacaatcaatggtgagagatcta 387  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17664017 tttaaagaaaaactgaacataaagaactaacctagaatcatgcttgggaatccactctttctcaccgtccacgttacgacaatcaatggtgagagatcta 17663918  T
Q  388 gcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaacatatac 455  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17663917 gcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaacatatac 17663850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 17664329 - 17664155
Alignment:
Q  16 caacttccaggaacctgtaaaaattgtgcaaaacgttgcaaagataagaattcaggaattgagaaagaaataaaagttgaaagtgattcatgagtattta 115  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17664329 caacttccgggaacctgtaaaaattgtgcaaaacgttgcaaagataagaattcaggaattgagaaagaaataaaagttgaaagtgattcatgagtattta 17664230  T
Q  116 tttatacatgtggaaatagttttataatttagagagaagctatggattttgagacgttaaatatggcatcgctta 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17664229 tttatacatgtggaaatagttttataatttagagagaagctatggattttgagacgttaaatatcgcatcgctta 17664155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 19246736 - 19246636
Alignment:
Q  16 caacttccaggaacctgtaaaaattgtgcaaaacgttgcaaagataagaattcaggaattgagaaagaaataaaagttgaaagtgattcatgagtattta 115  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19246736 caacttccgggaacctgtaaaaattgtgcaaaacgttgcaaagataagaattcaggaatttagaaagaaataaaagttgaaagtgattcatgagtattta 19246637  T
Q  116 t 116  Q
    |    
T  19246636 t 19246636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 530 - 620
Target Start/End: Complemental strand, 19246276 - 19246186
Alignment:
Q  530 tacctttgtaccctgatcgatgatgatagggcgatcagatagagccatgtagagaccttttttggtaaaagtgtttgccggtgaaggagat 620  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  19246276 tacctttgtaccctgatcgatgatgatagggcgatcagatagagccatgtagagatcttttttggtaaaagtgtttgccagtgaaggagat 19246186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 530 - 620
Target Start/End: Complemental strand, 17663621 - 17663531
Alignment:
Q  530 tacctttgtaccctgatcgatgatgatagggcgatcagatagagccatgtagagaccttttttggtaaaagtgtttgccggtgaaggagat 620  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||    
T  17663621 tacctttgtaccctggtcgatgatgatagggcgatcagatagagccatgtagagatcttttttggtaaaagtgtttgccagggaaggagat 17663531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 23332244 - 23332330
Alignment:
Q  16 caacttccaggaacctgtaaaaattgtgcaaaacgttgcaaagataagaattcaggaattgagaaagaaataaaagttgaaagtgattcat 106  Q
    |||||||  |||||||||||||||||||||||| |||||||||||| |||| ||| |||||    ||||| ||||||||||||||||||||    
T  23332244 caacttcggggaacctgtaaaaattgtgcaaaaagttgcaaagatatgaatacagaaattg----agaaaaaaaagttgaaagtgattcat 23332330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 367 - 447
Target Start/End: Complemental strand, 898998 - 898918
Alignment:
Q  367 caatcaatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttca 447  Q
    |||| ||||||||||||||| |||||||||| ||||||  | | |||||| || || | ||||| ||||||||| ||||||    
T  898998 caatgaatggtgagagatctggcagcaagcatgtaacatatttttccacttttcctatccaatttaaagctctgaatttca 898918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 6e-45; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 307 - 455
Target Start/End: Complemental strand, 33137777 - 33137629
Alignment:
Q  307 taaagaactaacctagaatcatgcatgggaatccactctttctcaccgtccacgttacgacaatcaatggtgagagatctagcagcaagcaggtaacact 406  Q
    |||||||||||||||||||||| ||| |||||| |||||||| |||  | |||   |||||| |||||||||||||||||||||||||||| ||||||||    
T  33137777 taaagaactaacctagaatcatccataggaatcaactctttcacacgatacacacaacgacactcaatggtgagagatctagcagcaagcatgtaacact 33137678  T
Q  407 tctgtccactctttctttgcaattgaaagctctgcatttcaacatatac 455  Q
    | |||||||||||||| ||||||||||||||||||||||||||||||||    
T  33137677 tttgtccactctttctgtgcaattgaaagctctgcatttcaacatatac 33137629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 7e-20; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 378 - 448
Target Start/End: Original strand, 45526202 - 45526272
Alignment:
Q  378 gagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaa 448  Q
    |||||||||||||||||||| ||||||||| | |||||||||||| | |||||||||||||||||||||||    
T  45526202 gagagatctagcagcaagcatgtaacacttttttccactctttctatccaattgaaagctctgcatttcaa 45526272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 371 - 445
Target Start/End: Original strand, 35203174 - 35203248
Alignment:
Q  371 caatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcattt 445  Q
    |||||| |||||||||||||||||||| ||||||||| | |||||||||||| | |||||||| |||||||||||    
T  35203174 caatggagagagatctagcagcaagcatgtaacacttttttccactctttctatccaattgaatgctctgcattt 35203248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 367 - 448
Target Start/End: Complemental strand, 35295270 - 35295189
Alignment:
Q  367 caatcaatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaa 448  Q
    |||| ||| ||||||||||||||||||||||  |||||||| |  ||||||||||| | |||||||||||||||||||||||    
T  35295270 caattaatagtgagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttcaa 35295189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 371 - 445
Target Start/End: Original strand, 35476988 - 35477062
Alignment:
Q  371 caatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcattt 445  Q
    |||||| |||||||||||||||||||| ||||||||| |  ||||||||||| | |||||||| |||||||||||    
T  35476988 caatggcgagagatctagcagcaagcatgtaacactttttcccactctttctatccaattgaaggctctgcattt 35477062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 378 - 443
Target Start/End: Original strand, 8640315 - 8640380
Alignment:
Q  378 gagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcat 443  Q
    |||||||||||||||||||| ||||||||| | |||||||||||| | |||||||| |||||||||    
T  8640315 gagagatctagcagcaagcatgtaacacttttttccactctttctgtccaattgaacgctctgcat 8640380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 371 - 448
Target Start/End: Original strand, 35216965 - 35217042
Alignment:
Q  371 caatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaa 448  Q
    |||||| |||||||||||||| ||||| ||||||||| | |||||||||||| | |||||| || |||||||||||||    
T  35216965 caatggagagagatctagcagaaagcatgtaacacttttttccactctttctatccaattggaaactctgcatttcaa 35217042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 367 - 455
Target Start/End: Original strand, 35222778 - 35222866
Alignment:
Q  367 caatcaatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaacatatac 455  Q
    |||||||||  |||||||||||||||||||| |  |||||| | |||||||||||| | |||||||| |||||  ||||||||||||||    
T  35222778 caatcaatgtcgagagatctagcagcaagcatgacacacttttttccactctttctatccaattgaacgctcttaatttcaacatatac 35222866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 379 - 450
Target Start/End: Original strand, 35272922 - 35272993
Alignment:
Q  379 agagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaaca 450  Q
    ||||||||||||| ||||| ||||||||| | |||||||||||| |  ||||||| ||||||||||||||||    
T  35272922 agagatctagcagaaagcatgtaacacttttttccactctttctctctaattgaatgctctgcatttcaaca 35272993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 378 - 448
Target Start/End: Original strand, 35206425 - 35206495
Alignment:
Q  378 gagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaa 448  Q
    |||||||||||||| ||||| ||||||||| | |||||||||||| | |||||| || |||||||||||||    
T  35206425 gagagatctagcagaaagcatgtaacacttttttccactctttctatccaattggaaactctgcatttcaa 35206495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 378 - 448
Target Start/End: Original strand, 35213583 - 35213653
Alignment:
Q  378 gagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaa 448  Q
    ||||||||||||||||||||  ||||| || | |||||| ||||| | |||||||||||||||||||||||    
T  35213583 gagagatctagcagcaagcatataacatttttttccactttttctctccaattgaaagctctgcatttcaa 35213653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 546 - 596
Target Start/End: Original strand, 35228634 - 35228684
Alignment:
Q  546 tcgatgatgatagggcgatcagatagagccatgtagagaccttttttggta 596  Q
    ||||||||||||||||||||||||||||| || |||||| |||||||||||    
T  35228634 tcgatgatgatagggcgatcagatagagcaatatagagatcttttttggta 35228684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 371 - 444
Target Start/End: Original strand, 35192834 - 35192907
Alignment:
Q  371 caatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatt 444  Q
    |||||| ||||||||||||||||||||  |||||||| | ||||||||| || | |||||||||||||| ||||    
T  35192834 caatggagagagatctagcagcaagcatataacacttttttccactcttcctatccaattgaaagctctacatt 35192907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 372 - 445
Target Start/End: Original strand, 45534400 - 45534473
Alignment:
Q  372 aatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcattt 445  Q
    ||||| |||||||||||||||||||| ||||||||| |  ||||| ||||| |  |||||||||||||||||||    
T  45534400 aatggcgagagatctagcagcaagcatgtaacactttttcccactatttctatctaattgaaagctctgcattt 45534473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 379 - 447
Target Start/End: Original strand, 35228446 - 35228514
Alignment:
Q  379 agagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttca 447  Q
    ||||||||||||| |||||  |||||||||| |||||||||||| | ||||||||| |||| |||||||    
T  35228446 agagatctagcagaaagcatataacacttctttccactctttctctccaattgaaaactctacatttca 35228514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 371 - 448
Target Start/End: Original strand, 35145221 - 35145298
Alignment:
Q  371 caatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaa 448  Q
    |||||| |||||||||||||| || || ||||||||| | || ||||| ||| | |||||||||||| ||||||||||    
T  35145221 caatggcgagagatctagcagaaaccatgtaacacttttttctactctctctattcaattgaaagctttgcatttcaa 35145298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 530 - 596
Target Start/End: Original strand, 35273052 - 35273118
Alignment:
Q  530 tacctttgtaccctgatcgatgatgatagggcgatcagatagagccatgtagagaccttttttggta 596  Q
    ||||||| || | ||||||||||||| |||||||||||||||||| |  |||||| | |||||||||    
T  35273052 tacctttttatcatgatcgatgatgacagggcgatcagatagagcaagatagagatcctttttggta 35273118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 440
Target Start/End: Original strand, 35265360 - 35265421
Alignment:
Q  379 agagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctg 440  Q
    ||||||||||||| ||||| ||||||||| | |||||||||||| | |||||| || |||||    
T  35265360 agagatctagcagaaagcatgtaacacttttttccactctttctgtccaattggaaactctg 35265421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University