View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13115_low_11 (Length: 261)
Name: NF13115_low_11
Description: NF13115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13115_low_11 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] scaffold0097 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 261
Target Start/End: Complemental strand, 21262282 - 21262030
Alignment:
| Q |
8 |
atcttgcacctagatatcgtggtagaaaagattaccctacacaaaatgtcttggttgaatgcacatttgacttgaaatttacttatgtcttggttggatg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21262282 |
atcttgcacctagatatcgtggtagaaaagattaccctacacaaaatgtcttggctgcatgcacatttgacttgaaatttacttatgtcttggttggatg |
21262183 |
T |
|
| Q |
108 |
ggaaggaacagcatccgactctagaatagttaagagtgcgttgacacgtgcatatcctcttaaagttccacgaggtnnnnnnnnncacaacataattgta |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
21262182 |
ggaaggaacagcatccgactctagaatagttaagagtgcgttgacacgtgcatatcctcttaaagttccacgatgt-aaaaaaaacacaacataattgta |
21262084 |
T |
|
| Q |
208 |
caagtatctagattagccaaactaataaactcgttatttttataggaaaatatt |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
21262083 |
caagtatctagattagccaaactaataaactcattatttttaccggaaaatatt |
21262030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 5 - 173
Target Start/End: Complemental strand, 20048 - 19880
Alignment:
| Q |
5 |
cagatcttgcacctagatatcgtggtagaaaagattaccctacacaaaatgtcttggttgaatgcacatttgacttgaaatttacttatgtcttggttgg |
104 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||| | | || ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
20048 |
cagaacttgcacctagataccgtggtagaaaagattaccctacacaaaatgtactcgctgcgtgcacatttgacttgaaatttacatatgtcttggttgg |
19949 |
T |
|
| Q |
105 |
atgggaaggaacagcatccgactctagaatagttaagagtgcgttgacacgtgcatatcctcttaaagt |
173 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| |||||||| ||||||||| |||||||||||||| |
|
|
| T |
19948 |
atgggaaggaacagcatcagactcaagaatagtaaagagtgctttgacacgtcggtatcctcttaaagt |
19880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 5 - 173
Target Start/End: Complemental strand, 22529911 - 22529743
Alignment:
| Q |
5 |
cagatcttgcacctagatatcgtggtagaaaagattaccctacacaaaatgtcttggttgaatgcacatttgacttgaaatttacttatgtcttggttgg |
104 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||| | | || ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22529911 |
cagaacttgcacctagataccgtggtagaaaagattaccctacacaaaatgtactcgctgcgtgcacatttgacttgaaatttacatatgtcttggttgg |
22529812 |
T |
|
| Q |
105 |
atgggaaggaacagcatccgactctagaatagttaagagtgcgttgacacgtgcatatcctcttaaagt |
173 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| |||||||| ||||||||| |||||||||||||| |
|
|
| T |
22529811 |
atgggaaggaacagcatcagactcaagaatagtaaagagtgctttgacacgtcggtatcctcttaaagt |
22529743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 5 - 173
Target Start/End: Complemental strand, 25992520 - 25992352
Alignment:
| Q |
5 |
cagatcttgcacctagatatcgtggtagaaaagattaccctacacaaaatgtcttggttgaatgcacatttgacttgaaatttacttatgtcttggttgg |
104 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||| | | || ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
25992520 |
cagaacttgcacctagataccgtggtagaaaagattaccctacacaaaatgtactcgctgcgtgcacatttgacttgaaatttacatatgtcttggttgg |
25992421 |
T |
|
| Q |
105 |
atgggaaggaacagcatccgactctagaatagttaagagtgcgttgacacgtgcatatcctcttaaagt |
173 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| |||||||| ||||||||| |||||||||||||| |
|
|
| T |
25992420 |
atgggaaggaacagcatcagactcaagaatagtaaagagtgctttgacacgtcggtatcctcttaaagt |
25992352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 5 - 137
Target Start/End: Complemental strand, 22533122 - 22532990
Alignment:
| Q |
5 |
cagatcttgcacctagatatcgtggtagaaaagattaccctacacaaaatgtcttggttgaatgcacatttgacttgaaatttacttatgtcttggttgg |
104 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||| || | || ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22533122 |
cagaacttgcacctagataccgtggtagaaaagattaccctacacaaaatgtattcgctgcgtgcacatttgacttgaaatttacatatgtcttggttgg |
22533023 |
T |
|
| Q |
105 |
atgggaaggaacagcatccgactctagaatagt |
137 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| |
|
|
| T |
22533022 |
atgggaaggaacagcatcagactcaagaatagt |
22532990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 5 - 173
Target Start/End: Original strand, 20984745 - 20984913
Alignment:
| Q |
5 |
cagatcttgcacctagatatcgtggtagaaaagattaccctacacaaaatgtcttggttgaatgcacatttgacttgaaatttacttatgtcttggttgg |
104 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||| | | || ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
20984745 |
cagaacttgcacctagataccgtggtagaaaagattaccctacacaaaatgtactcgctgcgtgcacatttgacttgaaatttacatatgtcttggttgg |
20984844 |
T |
|
| Q |
105 |
atgggaaggaacagcatccgactctagaatagttaagagtgcgttgacacgtgcatatcctcttaaagt |
173 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| |||||||| ||||||||| |||||||||||||| |
|
|
| T |
20984845 |
atgggaaggaacagcatcagactcaagaatagtaaagagtgctttgacacgtcggtatcctcttaaagt |
20984913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 5 - 173
Target Start/End: Complemental strand, 49366988 - 49366820
Alignment:
| Q |
5 |
cagatcttgcacctagatatcgtggtagaaaagattaccctacacaaaatgtcttggttgaatgcacatttgacttgaaatttacttatgtcttggttgg |
104 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||| | | || ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
49366988 |
cagaacttgcacctagataccgtggtagaaaagattaccctacacaaaatgtactcgctgcgtgcacatttgacttgaaatttacatatgtcttggttgg |
49366889 |
T |
|
| Q |
105 |
atgggaaggaacagcatccgactctagaatagttaagagtgcgttgacacgtgcatatcctcttaaagt |
173 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| |||||||| ||||||||| |||||||||||||| |
|
|
| T |
49366888 |
atgggaaggaacagcatcagactcaagaatagtaaagagtgctttgacacgtcggtatcctcttaaagt |
49366820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 5 - 173
Target Start/End: Complemental strand, 20716210 - 20716042
Alignment:
| Q |
5 |
cagatcttgcacctagatatcgtggtagaaaagattaccctacacaaaatgtcttggttgaatgcacatttgacttgaaatttacttatgtcttggttgg |
104 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||| | | || ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
20716210 |
cagaacttgcacctagataccgtggtagaaaagattaccctacacaaaatgtactcgctgcgtgcacatttgacttgaaatttacatatgtcttggttgg |
20716111 |
T |
|
| Q |
105 |
atgggaaggaacagcatccgactctagaatagttaagagtgcgttgacacgtgcatatcctcttaaagt |
173 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| |||||||| ||||||||| |||||||||||||| |
|
|
| T |
20716110 |
atgggaaggaacagcatcagactcaagaatagtaaagagtgctttgacacgtcggtatcctcttaaagt |
20716042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 136 - 261
Target Start/End: Complemental strand, 22020406 - 22020279
Alignment:
| Q |
136 |
gttaagagtgcgttgacacgtgcatatcctcttaaagttccacgaggtnnnnnnnnncacaacataattgtacaagtatctagattagccaaactaataa |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| || |||| | ||||||| |||||||||||||||||||||||| |
|
|
| T |
22020406 |
gttaagagtgcgttgacacgtgcatatcctcttaaagttccacaaggtaaaaaaacacataacaaatttgtacatttatctagattagccaaactaataa |
22020307 |
T |
|
| Q |
236 |
actcgtta--tttttataggaaaatatt |
261 |
Q |
| |
|
|||| ||| |||||||||||||||||| |
|
|
| T |
22020306 |
actcattatttttttataggaaaatatt |
22020279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 5 - 173
Target Start/End: Original strand, 33092655 - 33092823
Alignment:
| Q |
5 |
cagatcttgcacctagatatcgtggtagaaaagattaccctacacaaaatgtcttggttgaatgcacatttgacttgaaatttacttatgtcttggttgg |
104 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||| | | || |||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
33092655 |
cagaacttgcacctagataccgtggtagaaaagattaccctacacaaaatgtactcgctgcgtgcacatttggcttgaaatttacatatgtcttggttgg |
33092754 |
T |
|
| Q |
105 |
atgggaaggaacagcatccgactctagaatagttaagagtgcgttgacacgtgcatatcctcttaaagt |
173 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| |||||||| ||||||||| |||||||||||||| |
|
|
| T |
33092755 |
atgggaaggaacagcatcagactcaagaatagtaaagagtgctttgacacgtcggtatcctcttaaagt |
33092823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 5 - 173
Target Start/End: Complemental strand, 13190340 - 13190172
Alignment:
| Q |
5 |
cagatcttgcacctagatatcgtggtagaaaagattaccctacacaaaatgtcttggttgaatgcacatttgacttgaaatttacttatgtcttggttgg |
104 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||| | | || ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
13190340 |
cagaacttgcacctagataccgtggtagaaaagattaccctacacaaaatgtactcgctgcgtgcacatttgacttgaaatttacatatgtcttggttgg |
13190241 |
T |
|
| Q |
105 |
atgggaaggaacagcatccgactctagaatagttaagagtgcgttgacacgtgcatatcctcttaaagt |
173 |
Q |
| |
|
||||||||||||| |||| ||||| |||||||| |||||||| ||||||| | |||||||||||||| |
|
|
| T |
13190240 |
atgggaaggaacaacatcagactcaagaatagtaaagagtgctttgacacatcggtatcctcttaaagt |
13190172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University