View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13115_low_13 (Length: 249)

Name: NF13115_low_13
Description: NF13115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13115_low_13
NF13115_low_13
[»] chr5 (19 HSPs)
chr5 (1-232)||(9850841-9851073)
chr5 (9-217)||(9824946-9825153)
chr5 (79-232)||(19606006-19606159)
chr5 (80-232)||(10558818-10558970)
chr5 (79-232)||(9836469-9836622)
chr5 (79-232)||(10564942-10565095)
chr5 (79-232)||(10747156-10747309)
chr5 (80-232)||(10611626-10611778)
chr5 (1-232)||(10740840-10741070)
chr5 (79-232)||(7192920-7193073)
chr5 (80-232)||(10580920-10581072)
chr5 (89-228)||(10588575-10588714)
chr5 (88-232)||(10216890-10217034)
chr5 (104-232)||(10604692-10604820)
chr5 (80-232)||(10763274-10763426)
chr5 (104-232)||(11048798-11048926)
chr5 (79-232)||(10717081-10717234)
chr5 (79-232)||(10550699-10550852)
chr5 (1-69)||(10652505-10652573)
[»] chr6 (5 HSPs)
chr6 (79-232)||(12932194-12932347)
chr6 (79-232)||(12948559-12948712)
chr6 (85-232)||(12899491-12899638)
chr6 (79-232)||(12957993-12958146)
chr6 (119-232)||(12907146-12907258)
[»] chr2 (1 HSPs)
chr2 (79-232)||(17923544-17923697)
[»] chr3 (1 HSPs)
chr3 (80-232)||(31467303-31467455)
[»] scaffold0692 (1 HSPs)
scaffold0692 (134-232)||(7264-7361)
[»] chr8 (1 HSPs)
chr8 (145-228)||(28605608-28605690)


Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 9851073 - 9850841
Alignment:
Q  1 tttggttctgtgtataaaggaaatcctgtcagagaagataaaattatttccataaaggtcttgaaccttgnnnnnnnn-gggagttcacaagagttttat 99  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||    
T  9851073 tttggttctgtgtataaaggaattcctgtcagagaagataaaattatttccataaaggtcttgaaccttgaaaaaaaaagggagttcacaagagttttat 9850974  T
Q  100 tacggaatgtaatgccctcaaaatattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattacaaagggcatgaattcaaaagct 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9850973 tacggaatgtaatgccctcaaaatattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattacaaagggcatgaattcaaaagct 9850874  T
Q  200 ctagttttttagtacatgataaatggaagctta 232  Q
    |||||||||||||||||||||||||||||||||    
T  9850873 ctagttttttagtacatgataaatggaagctta 9850841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 9 - 217
Target Start/End: Original strand, 9824946 - 9825153
Alignment:
Q  9 tgtgtataaaggaaatcctgtcagagaagataaaattatttccataaaggtcttgaaccttgnnnnnnnngggagttcacaagagttttattacggaatg 108  Q
    ||||||||||| ||||| | |||||||||||||| ||||| ||||||||||||||||| |||        ||||| |||||||||||||||||| |||||    
T  9824946 tgtgtataaagaaaatcttatcagagaagataaagttattgccataaaggtcttgaactttgaaaagaa-gggagctcacaagagttttattaccgaatg 9825044  T
Q  109 taatgccctcaaaa-tattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattacaaagggcatgaattcaaaagctctagtttt 207  Q
    |||||  ||||||| ||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||| |||||| ||||||||||||||    
T  9825045 taatgaactcaaaaatattagacatcgaaatttggttaagattttaacatgtttttctagtatcgattacaaagggcaagaattc-aaagctctagtttt 9825143  T
Q  208 ttagtacatg 217  Q
    | ||||||||    
T  9825144 tgagtacatg 9825153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 79 - 232
Target Start/End: Complemental strand, 19606159 - 19606006
Alignment:
Q  79 gggagttcacaagagttttattacggaatgtaatgccctcaaaa-tattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattac 177  Q
    ||||| |||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||| |||||||||||||||| |||||||||||| ||| ||    
T  19606159 gggagctcacaagagttttattactgaatgtaatgctctcaaaaatattagacatcgaaatttagttaagattttaacttgttgttctagtattgataac 19606060  T
Q  178 aaagggcatgaattcaaaagctctagttttttagtacatgataaatggaagctta 232  Q
    ||||| |  |||||| ||||||||||||||| ||||||||| |||||||||||||    
T  19606059 aaaggtctagaattc-aaagctctagtttttgagtacatgagaaatggaagctta 19606006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 80 - 232
Target Start/End: Original strand, 10558818 - 10558970
Alignment:
Q  80 ggagttcacaagagttttattacggaatgtaatgccctcaaaa-tattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattaca 178  Q
    |||| |||||||||||||||||| ||||||||||| || |||| |||||||||||||||| |||||||||||||||||| |||||||||||| |||||||    
T  10558818 ggagctcacaagagttttattaccgaatgtaatgcactaaaaaatattagacatcgaaatctggttaagattttaacttgttgttctagtattgattaca 10558917  T
Q  179 aagggcatgaattcaaaagctctagttttttagtacatgataaatggaagctta 232  Q
    |||| || |||||| ||||||||||||||| | ||||||| |||||||||||||    
T  10558918 aaggtcaggaattc-aaagctctagtttttgaatacatgaaaaatggaagctta 10558970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 232
Target Start/End: Complemental strand, 9836622 - 9836469
Alignment:
Q  79 gggagttcacaagagttttattacggaatgtaatgccctcaaaa-tattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattac 177  Q
    ||||| ||| |||||||||||| | ||||||||||| ||||||| ||||||||||||||||||||| ||| || |||| | |||||||||||| |||||     
T  9836622 gggagctcataagagttttattgctgaatgtaatgcactcaaaaatattagacatcgaaatttggtcaaggttataacatgttgttctagtattgattat 9836523  T
Q  178 aaagggcatgaattcaaaagctctagttttttagtacatgataaatggaagctta 232  Q
    |||||    |||||  |||||| |||||||| | ||||||| |||||||||||||    
T  9836522 aaaggtggagaatt-taaagctttagtttttgattacatgaaaaatggaagctta 9836469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 232
Target Start/End: Original strand, 10564942 - 10565095
Alignment:
Q  79 gggagttcacaagagttttattacggaatgtaatgccctcaaaa-tattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattac 177  Q
    ||||| |||||||||||| |||   ||||||||||| ||||||| |||| |||| |||||||| |||||| ||||||| | |||||| ||||  ||||||    
T  10564942 gggagctcacaagagtttcattgttgaatgtaatgcactcaaaaatattcgacaccgaaatttagttaaggttttaacctgttgttcaagtacagattac 10565041  T
Q  178 aaagggcatgaattcaaaagctctagttttttagtacatgataaatggaagctta 232  Q
    ||||| || |||||  |||||||| |||||| ||||||||| |||||||||||||    
T  10565042 aaaggtcaagaatt-taaagctctggtttttgagtacatgaaaaatggaagctta 10565095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 232
Target Start/End: Complemental strand, 10747309 - 10747156
Alignment:
Q  79 gggagttcacaagagttttattacggaatgtaatgccctcaa-aatattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattac 177  Q
    ||||| |||||||||||| |||   ||||||||||  ||||| || |||||||| |||||||| |||||||||||||| | |||||||||||| ||||||    
T  10747309 gggagctcacaagagtttcattgttgaatgtaatgtactcaagaacattagacaccgaaatttagttaagattttaacgtgttgttctagtatagattac 10747210  T
Q  178 aaagggcatgaattcaaaagctctagttttttagtacatgataaatggaagctta 232  Q
    ||||  || || ||  ||||||||||||||||| ||||| | |||||||||||||    
T  10747209 aaagttcaggagtt-taaagctctagttttttattacataaaaaatggaagctta 10747156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 80 - 232
Target Start/End: Original strand, 10611626 - 10611778
Alignment:
Q  80 ggagttcacaagagttttattacggaatgtaatgccctcaaaat-attagacatcgaaatttggttaagattttaacttcttgttctagtatcgattaca 178  Q
    |||| |||||||||||| |||   ||||||||||| || ||| | |||||||| |||||||| |||||||||||||| | |||||||||||  |||||||    
T  10611626 ggagctcacaagagtttcattgttgaatgtaatgcactaaaatttattagacaccgaaatttagttaagattttaacatgttgttctagtacagattaca 10611725  T
Q  179 aagggcatgaattcaaaagctctagttttttagtacatgataaatggaagctta 232  Q
    |||| || |||||  ||||| ||||||||| | ||||||| |||||||||||||    
T  10611726 aaggtcaagaatt-taaagccctagtttttgattacatgaaaaatggaagctta 10611778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 10741070 - 10740840
Alignment:
Q  1 tttggttctgtgtataaaggaaatcctgtcagagaagataaaattatttccataaaggtcttgaaccttgnnnnnnnngggagttcacaagagttttatt 100  Q
    |||||||||||||| |||||||||| ||| | |||||| ||  || || || ||||||||||||||||          ||||| |||||||||||| |||    
T  10741070 tttggttctgtgtacaaaggaaatcttgtgacagaagacaatgttgttgccgtaaaggtcttgaacctc-aaaaagaagggagctcacaagagtttcatt 10740972  T
Q  101 acggaatgtaatgccctcaaaa-tattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattacaaagggcatgaattcaaaagct 199  Q
       ||||||||||| ||||||| ||||||||| |||||||| ||||||||||| || | |||||||||||  ||||||||||| ||  | ||  ||||||    
T  10740971 gttgaatgtaatgcactcaaaaatattagacaccgaaatttagttaagattttgacatgttgttctagtacagattacaaaggtca-aacttttaaagct 10740873  T
Q  200 ctagttttttagtacatgataaatggaagctta 232  Q
    || |||||| | ||||||| |||||||||||||    
T  10740872 cttgtttttgattacatgaaaaatggaagctta 10740840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 79 - 232
Target Start/End: Original strand, 7192920 - 7193073
Alignment:
Q  79 gggagttcacaagagttttattacggaatgtaatgccctcaaaa-tattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattac 177  Q
    ||||| |||||||||||| ||| | ||||||||||| || |||| |||||||||||||||||||||||||||||| || | |||||| ||||  ||||||    
T  7192920 gggagctcacaagagtttcattgctgaatgtaatgcactaaaaaatattagacatcgaaatttggttaagattttgacatgttgttccagtacagattac 7193019  T
Q  178 aaagggcatgaattcaaaagctctagttttttagtacatgataaatggaagctta 232  Q
    ||||| || |||||  |||||| |||| ||| | |||||||  || |||||||||    
T  7193020 aaaggtcaagaatt-taaagctttagtctttgaatacatgaacaacggaagctta 7193073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 232
Target Start/End: Original strand, 10580920 - 10581072
Alignment:
Q  80 ggagttcacaagagttttattacggaatgtaatgccctcaaaa-tattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattaca 178  Q
    |||| ||||||||||||||||   ||||||||||| ||||||| ||||||||| | |||||| || ||| || |||| | |||||||||||   ||||||    
T  10580920 ggagctcacaagagttttattgttgaatgtaatgcactcaaaaatattagacaccaaaatttagtcaaggttctaacatgttgttctagtacaaattaca 10581019  T
Q  179 aagggcatgaattcaaaagctctagttttttagtacatgataaatggaagctta 232  Q
    |||| || ||||| ||| ||| |||||||||| ||||||| |||||||||||||    
T  10581020 aaggccaagaatttaaa-gctttagttttttattacatgaaaaatggaagctta 10581072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 228
Target Start/End: Complemental strand, 10588714 - 10588575
Alignment:
Q  89 aagagttttattacggaatgtaatgccctcaa-aatattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattacaaagggcatg 187  Q
    |||||||||||| | ||||||||||| ||||| ||| ||||||||||||||||||  ||||||||||| | ||||||| |||  ||||| ||||| || |    
T  10588714 aagagttttattgccgaatgtaatgcactcaagaatgttagacatcgaaatttggccaagattttaacatgttgttctggtactgattataaaggtcaag 10588615  T
Q  188 aattcaaaagctctagttttttagtacatgataaatggaag 228  Q
    ||||  |||||| |||||||| | ||||||| |||||||||    
T  10588614 aatt-taaagctttagtttttgattacatgaaaaatggaag 10588575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 88 - 232
Target Start/End: Complemental strand, 10217034 - 10216890
Alignment:
Q  88 caagagttttattacggaatgtaatgccctcaaaat-attagacatcgaaatttggttaagattttaacttcttgttctagtatcgattacaaagggcat 186  Q
    |||||||||||||   ||||||||||| |||||||  |||||||| ||||| |  |||||| ||||||| | |||||||||||   | |||||||| ||     
T  10217034 caagagttttattgttgaatgtaatgcactcaaaaacattagacaccgaaactcagttaaggttttaacatgttgttctagtacaaactacaaaggtcaa 10216935  T
Q  187 gaattcaaaagctctagttttttagtacatgataaatggaagctta 232  Q
    ||||| ||| |||||||||||||| ||||||| |||||||||||||    
T  10216934 gaatttaaa-gctctagttttttattacatgaaaaatggaagctta 10216890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 104 - 232
Target Start/End: Original strand, 10604692 - 10604820
Alignment:
Q  104 gaatgtaatgccctcaaaa-tattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattacaaagggcatgaattcaaaagctcta 202  Q
    ||||||||||| ||||||| ||| ||||| || ||||| ||| |  ||||||| | |||||||||||  ||||||||||| || ||||| ||| ||||||    
T  10604692 gaatgtaatgcactcaaaactataagacaccggaatttagttcaagttttaacatgttgttctagtacagattacaaaggtcaagaatttaaa-gctcta 10604790  T
Q  203 gttttttagtacatgataaatggaagctta 232  Q
    |||||| | ||||||| |||||||||||||    
T  10604791 gtttttgattacatgaaaaatggaagctta 10604820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 232
Target Start/End: Complemental strand, 10763426 - 10763274
Alignment:
Q  80 ggagttcacaagagttttattacggaatgtaatgccctcaaaa-tattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattaca 178  Q
    |||| |||||||||||| |||   ||||||||||| || |||| ||||  ||| || ||||| |||||||||||||| | |||||||||||  ||||| |    
T  10763426 ggagctcacaagagtttcattgttgaatgtaatgcactaaaaaatattcaacaccggaatttagttaagattttaacatgttgttctagtactgattata 10763327  T
Q  179 aagggcatgaattcaaaagctctagttttttagtacatgataaatggaagctta 232  Q
    |||| || |||||  |||||||| |||||| | ||||||| |||||||||||||    
T  10763326 aaggtcaagaatt-taaagctctggtttttgattacatgaaaaatggaagctta 10763274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 104 - 232
Target Start/End: Complemental strand, 11048926 - 11048798
Alignment:
Q  104 gaatgtaatgccctcaaaat-attagacatcgaaatttggttaagattttaacttcttgttctagtatcgattacaaagggcatgaattcaaaagctcta 202  Q
    ||||||||||| |||||||  |||||||| ||||| || |||||| ||||||| | |||||||||||  |||||||||||  | |||||  ||||| |||    
T  11048926 gaatgtaatgcactcaaaaacattagacaccgaaacttagttaaggttttaacctgttgttctagtacagattacaaaggtgaagaatt-taaagcacta 11048828  T
Q  203 gttttttagtacatgataaatggaagctta 232  Q
    |||||| | ||||||| |||||||||||||    
T  11048827 gtttttgattacatgaaaaatggaagctta 11048798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 232
Target Start/End: Complemental strand, 10717234 - 10717081
Alignment:
Q  79 gggagttcacaagagttttattacggaatgtaatgccctcaaaa-tattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattac 177  Q
    ||||| |||||||||||| |||   ||||||||||| || |||| ||| ||||| |||||| | || ||||| ||||| | |||||||||||  ||||||    
T  10717234 gggagctcacaagagtttcattgttgaatgtaatgcactaaaaaatatcagacaccgaaatctagtgaagatattaacatgttgttctagtacagattac 10717135  T
Q  178 aaagggcatgaattcaaaagctctagttttttagtacatgataaatggaagctta 232  Q
    ||||| ||  | ||  ||||||||||||||| | ||||||| |||||||||||||    
T  10717134 aaaggtca-aacttttaaagctctagtttttgattacatgaaaaatggaagctta 10717081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 232
Target Start/End: Original strand, 10550699 - 10550852
Alignment:
Q  79 gggagttcacaagagttttattacggaatgtaatgccct-caaaatattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattac 177  Q
    |||||||||||||||||| ||| | ||||||||||| ||  |||||||||| ||  ||||| | ||||| ||||| |||| |||||| || |  ||||||    
T  10550699 gggagttcacaagagtttcattgctgaatgtaatgcactaaaaaatattaggcacagaaatctagttaaaattttgacttgttgttccagcacagattac 10550798  T
Q  178 aaagggcatgaattcaaaagctctagttttttagtacatgataaatggaagctta 232  Q
    |||||   ||| ||  |||||||| || ||| ||||||||| |||||||| ||||    
T  10550799 aaaggaagtgagtt-taaagctcttgtatttgagtacatgagaaatggaaactta 10550852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 10652573 - 10652505
Alignment:
Q  1 tttggttctgtgtataaaggaaatcctgtcagagaagataaaattatttccataaaggtcttgaacctt 69  Q
    |||||||||||||| |||||||||| ||    |||||||||| || || ||||||||||| ||||||||    
T  10652573 tttggttctgtgtacaaaggaaatcttgcatcagaagataaagttgttgccataaaggtcctgaacctt 10652505  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 79 - 232
Target Start/End: Original strand, 12932194 - 12932347
Alignment:
Q  79 gggagttcacaagagttttattacggaatgtaatgccctcaaaa-tattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattac 177  Q
    ||||| |||||||||||| |||   |||||||| || ||||||| ||||||||| ||||||||||||||| ||||||| | ||||||||| |   |||||    
T  12932194 gggagctcacaagagtttcattgttgaatgtaacgcactcaaaaatattagacaccgaaatttggttaaggttttaacatgttgttctagcacaaattac 12932293  T
Q  178 aaagggcatgaattcaaaagctctagttttttagtacatgataaatggaagctta 232  Q
    ||||| || |||||  ||||| ||||||||| | ||||||| |||||||||||||    
T  12932294 aaaggtcaagaatt-taaagcactagtttttgaatacatgaaaaatggaagctta 12932347  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 79 - 232
Target Start/End: Original strand, 12948559 - 12948712
Alignment:
Q  79 gggagttcacaagagttttattacggaatgtaatgccctcaaaa-tattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattac 177  Q
    ||||| |||||||||||| |||   ||||||||||| || |||| ||||||||| ||||||||||||||| ||||||| | ||||||||| |   || ||    
T  12948559 gggagctcacaagagtttcattgttgaatgtaatgcactaaaaaatattagacaccgaaatttggttaaggttttaacatgttgttctagcacaaataac 12948658  T
Q  178 aaagggcatgaattcaaaagctctagttttttagtacatgataaatggaagctta 232  Q
    ||||| || |||||  ||||||||||||||| | ||||||| |||||||||||||    
T  12948659 aaaggccaagaatt-taaagctctagtttttgaatacatgaaaaatggaagctta 12948712  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 85 - 232
Target Start/End: Original strand, 12899491 - 12899638
Alignment:
Q  85 tcacaagagttttattacggaatgtaatgccctcaaaat-attagacatcgaaatttggttaagattttaacttcttgttctagtatcgattacaaaggg 183  Q
    |||||||||||| |||   ||||||||||| |||||||  ||| |||| ||||||||||||||| ||||||| | ||||||||| |   ||||||||||     
T  12899491 tcacaagagtttcattttagaatgtaatgcactcaaaaacattcgacaccgaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggt 12899590  T
Q  184 catgaattcaaaagctctagttttttagtacatgataaatggaagctta 232  Q
    || ||||| ||| |||||||||||| | ||||||| |||||||||||||    
T  12899591 caagaatttaaa-gctctagtttttgaatacatgaaaaatggaagctta 12899638  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 79 - 232
Target Start/End: Original strand, 12957993 - 12958146
Alignment:
Q  79 gggagttcacaagagttttattacggaatgtaatgccctcaaaa-tattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattac 177  Q
    ||||| |||||||||||| |||   |||||||| || ||||||| ||||||||| ||||||||||||| | ||||||| | ||||||||| |   |||||    
T  12957993 gggagctcacaagagtttcattgttgaatgtaacgcactcaaaaatattagacaccgaaatttggttagggttttaacatgttgttctagcacaaattac 12958092  T
Q  178 aaagggcatgaattcaaaagctctagttttttagtacatgataaatggaagctta 232  Q
    ||||| || |||||  ||||||||||||||| | ||||||  |||||||||||||    
T  12958093 aaaggtcaagaatt-taaagctctagtttttgaatacatggaaaatggaagctta 12958146  T

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Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 232
Target Start/End: Original strand, 12907146 - 12907258
Alignment:
Q  119 aaaatattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattacaaagggcatgaattcaaaagctctagttttttagtacatga 218  Q
    |||||||||||||  |||||||||||||| ||||||| | ||||||||| |   |||||||||| || |||||  ||||||||||||||| | |||||||    
T  12907146 aaaatattagacacagaaatttggttaaggttttaacatgttgttctagcacaaattacaaaggtcaagaatt-taaagctctagtttttgaatacatga 12907244  T
Q  219 taaatggaagctta 232  Q
     |||||||||||||    
T  12907245 aaaatggaagctta 12907258  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 79 - 232
Target Start/End: Complemental strand, 17923697 - 17923544
Alignment:
Q  79 gggagttcacaagagttttattacggaatgtaatgccctcaaaa-tattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattac 177  Q
    ||||| ||||||||||||  ||   |||||||| || ||||||| ||||||||| ||||||||||||||| ||||||| | ||||||||| |   |||||    
T  17923697 gggagctcacaagagtttcgttgttgaatgtaacgcactcaaaaatattagacaccgaaatttggttaaggttttaacatgttgttctagcacaaattac 17923598  T
Q  178 aaagggcatgaattcaaaagctctagttttttagtacatgataaatggaagctta 232  Q
    ||||| || |||||  ||||||||||||||| | ||||||| |||||||||||||    
T  17923597 aaaggtcaagaatt-taaagctctagtttttgaatacatgaaaaatggaagctta 17923544  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 232
Target Start/End: Complemental strand, 31467455 - 31467303
Alignment:
Q  80 ggagttcacaagagttttattacggaatgtaatgccctcaaaa-tattagacatcgaaatttggttaagattttaacttcttgttctagtatcgattaca 178  Q
    |||| ||||||||||||  || | ||||| ||||| ||||||| ||||||||| |||||||||||||||||||||||    ||||| ||||  |||| ||    
T  31467455 ggagctcacaagagtttccttgctgaatgcaatgcactcaaaaatattagacaccgaaatttggttaagattttaacaagctgttccagtacagatttca 31467356  T
Q  179 aagggcatgaattcaaaagctctagttttttagtacatgataaatggaagctta 232  Q
    |||  || |||||  |||||||| |||||  ||||||||| ||| |||||||||    
T  31467355 aagatcaagaatt-taaagctcttgttttcgagtacatgaaaaacggaagctta 31467303  T

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Target: scaffold0692 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 232
Target Start/End: Original strand, 7264 - 7361
Alignment:
Q  134 gaaatttggttaagattttaacttcttgttctagtatcgattacaaagggcatgaattcaaaagctctagttttttagtacatgataaatggaagctta 232  Q
    |||||||||||| | ||||||| | ||||||||| |   |||||||||| || ||||| ||| |||||||||||| | ||||||| |||||||||||||    
T  7264 gaaatttggttagggttttaacatgttgttctagcacaaattacaaaggtcaagaatttaaa-gctctagtttttgaatacatgaaaaatggaagctta 7361  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 228
Target Start/End: Original strand, 28605608 - 28605690
Alignment:
Q  145 aagattttaacttcttgttctagtatcgattacaaagggcatgaattcaaaagctctagttttttagtacatgataaatggaag 228  Q
    ||||||||||| | |||||| ||||| |||||||| ||  |||||||| |||||| |||||||| ||||||||  |||||||||    
T  28605608 aagattttaacatgttgttcaagtatggattacaatggtaatgaattc-aaagctttagtttttgagtacatggaaaatggaag 28605690  T

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