View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13115_low_2 (Length: 556)

Name: NF13115_low_2
Description: NF13115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13115_low_2
NF13115_low_2
[»] chr5 (6 HSPs)
chr5 (27-117)||(39696275-39696365)
chr5 (436-488)||(39696499-39696551)
chr5 (481-540)||(39696562-39696621)
chr5 (183-244)||(19142992-19143053)
chr5 (183-244)||(41014343-41014404)
chr5 (336-402)||(39696403-39696467)
[»] chr3 (6 HSPs)
chr3 (183-244)||(6411871-6411932)
chr3 (183-245)||(47624087-47624149)
chr3 (183-244)||(22609812-22609873)
chr3 (183-244)||(40272861-40272923)
chr3 (183-244)||(26869753-26869814)
chr3 (183-228)||(54484754-54484799)
[»] chr7 (10 HSPs)
chr7 (183-244)||(11617637-11617699)
chr7 (183-244)||(33871959-33872020)
chr7 (193-245)||(6736913-6736965)
chr7 (183-244)||(7879662-7879724)
chr7 (183-244)||(23419723-23419785)
chr7 (187-244)||(32233188-32233245)
chr7 (183-244)||(38604551-38604612)
chr7 (183-244)||(48735171-48735231)
chr7 (183-227)||(42476913-42476957)
chr7 (184-228)||(42798710-42798754)
[»] chr2 (3 HSPs)
chr2 (183-244)||(32781337-32781399)
chr2 (183-244)||(12023968-12024029)
chr2 (183-244)||(36871517-36871578)
[»] scaffold0258 (1 HSPs)
scaffold0258 (183-244)||(13073-13134)
[»] chr8 (5 HSPs)
chr8 (183-228)||(2626563-2626608)
chr8 (183-244)||(13160726-13160787)
chr8 (183-244)||(45071289-45071350)
chr8 (183-244)||(44530173-44530235)
chr8 (183-244)||(12625913-12625976)
[»] chr4 (6 HSPs)
chr4 (183-244)||(5648283-5648344)
chr4 (187-244)||(40915853-40915910)
chr4 (185-244)||(6430677-6430736)
chr4 (183-244)||(20225008-20225068)
chr4 (183-244)||(49796822-49796883)
chr4 (183-247)||(54175085-54175150)
[»] chr1 (5 HSPs)
chr1 (183-244)||(11596560-11596621)
chr1 (183-244)||(32632606-32632667)
chr1 (183-244)||(46248002-46248064)
chr1 (183-244)||(31382263-31382324)
chr1 (183-228)||(41319855-41319900)
[»] scaffold0057 (1 HSPs)
scaffold0057 (183-227)||(43699-43743)


Alignment Details
Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 39696275 - 39696365
Alignment:
Q  27 gtggtgccaaagacaaatatttgtatttatccgaagcatgtcgaactaatgcttcattctcaccaggattaatcatacagctattcaagac 117  Q
    |||||||||| |||| ||||||||| |||||| |||||| ||||||||||||||||||||| |||||||| ||| |||| ||||| |||||    
T  39696275 gtggtgccaatgacagatatttgtacttatccaaagcatatcgaactaatgcttcattctcgccaggatttatcgtacaactattgaagac 39696365  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 436 - 488
Target Start/End: Original strand, 39696499 - 39696551
Alignment:
Q  436 atgatgctgtgcctacagtttggctgcaagcctggaacagattccaaacaata 488  Q
    |||||||||| | ||||||||||||||||||||| ||||||||||||| ||||    
T  39696499 atgatgctgtacatacagtttggctgcaagcctgtaacagattccaaataata 39696551  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 481 - 540
Target Start/End: Original strand, 39696562 - 39696621
Alignment:
Q  481 aaacaatagaatatatttcaagcaattacaaaataaaacaattagcatttagcagaagtg 540  Q
    |||||||| |||||||||||| | ||| ||||||||||||||||||| ||||||| ||||    
T  39696562 aaacaataaaatatatttcaaaccattgcaaaataaaacaattagcaattagcagcagtg 39696621  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 19142992 - 19143053
Alignment:
Q  183 ggggtcccatcatttggtgtattgtacgatgtcttaccttgtttttactcaagaggttgttt 244  Q
    ||||||||| ||||||||||| ||||||  | |||||| ||||||||| |||||||||||||    
T  19142992 ggggtcccaccatttggtgtactgtacgcagccttaccctgtttttacacaagaggttgttt 19143053  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 41014404 - 41014343
Alignment:
Q  183 ggggtcccatcatttggtgtattgtacgatgtcttaccttgtttttactcaagaggttgttt 244  Q
    ||||||||| ||||||||||||||||||  | |||||| ||||||||| ||||||| |||||    
T  41014404 ggggtcccaccatttggtgtattgtacgcagccttaccctgtttttacacaagaggctgttt 41014343  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 402
Target Start/End: Original strand, 39696403 - 39696467
Alignment:
Q  336 ctccacccatacataacatgtcggtttgagtgcagcattttgacacacaacaaaccccgagataatt 402  Q
    ||||||||||| ||| ||  |||||||||||||||||  |||||||| |||||||||| ||||||||    
T  39696403 ctccacccatatatagcacatcggtttgagtgcagca--ttgacacataacaaaccccaagataatt 39696467  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 6411871 - 6411932
Alignment:
Q  183 ggggtcccatcatttggtgtattgtacgatgtcttaccttgtttttactcaagaggttgttt 244  Q
    ||||||||||||||||||||||||||||  | |||||| ||||||||| ||||||| |||||    
T  6411871 ggggtcccatcatttggtgtattgtacgcagccttaccctgtttttacacaagaggctgttt 6411932  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 245
Target Start/End: Complemental strand, 47624149 - 47624087
Alignment:
Q  183 ggggtcccatcatttggtgtattgtacgatgtcttaccttgtttttactcaagaggttgtttt 245  Q
    ||||||||| ||||||||||||||||||  | |||||| ||||||||| ||||||| ||||||    
T  47624149 ggggtcccaccatttggtgtattgtacgcagccttaccctgtttttacacaagaggctgtttt 47624087  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 22609873 - 22609812
Alignment:
Q  183 ggggtcccatcatttggtgtattgtacgatgtcttaccttgtttttactcaagaggttgttt 244  Q
    ||||||||| ||||||||||||||||||  | |||||| ||||||||| ||||||| |||||    
T  22609873 ggggtcccaccatttggtgtattgtacgcagccttaccctgtttttacacaagaggctgttt 22609812  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 40272861 - 40272923
Alignment:
Q  183 ggggtcccatcatttggtgtattgtacgatgtcttaccttg-tttttactcaagaggttgttt 244  Q
    ||||||||| ||||||||||||||||||  | |||||| || ||||||| |||||||||||||    
T  40272861 ggggtcccaccatttggtgtattgtacgcagccttaccctgttttttacacaagaggttgttt 40272923  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 26869814 - 26869753
Alignment:
Q  183 ggggtcccatcatttggtgtattgtacgatgtcttaccttgtttttactcaagaggttgttt 244  Q
    ||||||||| ||||||||||||||||||  | |||||| ||||||||| | ||||| |||||    
T  26869814 ggggtcccaccatttggtgtattgtacgcagccttaccctgtttttacaccagaggctgttt 26869753  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 54484799 - 54484754
Alignment:
Q  183 ggggtcccatcatttggtgtattgtacgatgtcttaccttgttttt 228  Q
    ||||||||| ||||||||||||||||||  | ||||||||||||||    
T  54484799 ggggtcccaccatttggtgtattgtacgcagccttaccttgttttt 54484754  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 11617637 - 11617699
Alignment:
Q  183 ggggtcccatcatttggtgtattgtacgatgtcttaccttg-tttttactcaagaggttgttt 244  Q
    ||||||||| ||||||||||||||||||  |||||||| || ||||||| |||||||||||||    
T  11617637 ggggtcccaccatttggtgtattgtacgcagtcttaccctgttttttacacaagaggttgttt 11617699  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 33871959 - 33872020
Alignment:
Q  183 ggggtcccatcatttggtgtattgtacgatgtcttaccttgtttttactcaagaggttgttt 244  Q
    ||||||||| ||||||||||||||||||  | |||| | ||||||||| |||||||||||||    
T  33871959 ggggtcccaccatttggtgtattgtacgcagccttatcctgtttttacacaagaggttgttt 33872020  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 6736965 - 6736913
Alignment:
Q  193 catttggtgtattgtacgatgtcttaccttgtttttactcaagaggttgtttt 245  Q
    |||||||||||||||| |  |||||||||||||||||  ||||||||||||||    
T  6736965 catttggtgtattgtatgcagtcttaccttgtttttatacaagaggttgtttt 6736913  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 7879724 - 7879662
Alignment:
Q  183 ggggtcccatcatttggtgtattgtacgatgtcttaccttgt-ttttactcaagaggttgttt 244  Q
    ||||||||| ||||||||||||||||||  | |||||||||| |||||| |||||| ||||||    
T  7879724 ggggtcccaccatttggtgtattgtacgcagccttaccttgttttttacacaagagattgttt 7879662  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 23419723 - 23419785
Alignment:
Q  183 ggggtcccatcatttggtgtattgtacgatgtcttaccttg-tttttactcaagaggttgttt 244  Q
    ||||||||| ||||||||||||||||||  |||||||| || ||||||| ||||||| |||||    
T  23419723 ggggtcccaccatttggtgtattgtacgcagtcttaccctgttttttacacaagaggctgttt 23419785  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 32233188 - 32233245
Alignment:
Q  187 tcccatcatttggtgtattgtacgatgtcttaccttgtttttactcaagaggttgttt 244  Q
    ||||| ||||||||||| | |||| || |||||| ||||||||| |||||||||||||    
T  32233188 tcccaccatttggtgtaatatacgctgccttaccctgtttttacacaagaggttgttt 32233245  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 38604612 - 38604551
Alignment:
Q  183 ggggtcccatcatttggtgtattgtacgatgtcttaccttgtttttactcaagaggttgttt 244  Q
    |||||| || ||||||||||||||||||  | |||||| ||||||||| ||||||| |||||    
T  38604612 ggggtctcaccatttggtgtattgtacgcagccttaccctgtttttacacaagaggctgttt 38604551  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 48735171 - 48735231
Alignment:
Q  183 ggggtcccatcatttggtgtattgtacgatgtcttaccttgtttttactcaagaggttgttt 244  Q
    ||||||||| ||||||||||||||||||  | |||||| || |||||| |||||||||||||    
T  48735171 ggggtcccaccatttggtgtattgtacgcagccttaccgtg-ttttacacaagaggttgttt 48735231  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 42476957 - 42476913
Alignment:
Q  183 ggggtcccatcatttggtgtattgtacgatgtcttaccttgtttt 227  Q
    ||||||||| ||||||||||||||||||  | |||||||||||||    
T  42476957 ggggtcccaccatttggtgtattgtacgcagccttaccttgtttt 42476913  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 42798754 - 42798710
Alignment:
Q  184 gggtcccatcatttggtgtattgtacgatgtcttaccttgttttt 228  Q
    |||||||| ||||||||||||||||||  | ||||||||||||||    
T  42798754 gggtcccaccatttggtgtattgtacgcagccttaccttgttttt 42798710  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 32781337 - 32781399
Alignment:
Q  183 ggggtcccatcatttggtgtattgtacgatgtcttaccttg-tttttactcaagaggttgttt 244  Q
    ||||||||| ||||||||||||||||||  |||||||| || ||||||| |||||||||||||    
T  32781337 ggggtcccaccatttggtgtattgtacgcagtcttaccctgttttttacacaagaggttgttt 32781399  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 12023968 - 12024029
Alignment:
Q  183 ggggtcccatcatttggtgtattgtacgatgtcttaccttgtttttactcaagaggttgttt 244  Q
    ||||||||| ||||||||||||||||||  | |||||| ||||||||| ||||||| |||||    
T  12023968 ggggtcccaccatttggtgtattgtacgcagccttaccctgtttttacacaagaggctgttt 12024029  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 36871578 - 36871517
Alignment:
Q  183 ggggtcccatcatttggtgtattgtacgatgtcttaccttgtttttactcaagaggttgttt 244  Q
    ||||||||| ||||||||||||||||||  | |||||| |||||| || ||||||| |||||    
T  36871578 ggggtcccaccatttggtgtattgtacgcagccttaccctgttttcacacaagaggctgttt 36871517  T

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Target: scaffold0258 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 13073 - 13134
Alignment:
Q  183 ggggtcccatcatttggtgtattgtacgatgtcttaccttgtttttactcaagaggttgttt 244  Q
    ||||||||| |||| |||||||||||||  | |||||||||||||||| ||||||| |||||    
T  13073 ggggtcccaccattcggtgtattgtacgcagccttaccttgtttttacgcaagaggctgttt 13134  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 2626608 - 2626563
Alignment:
Q  183 ggggtcccatcatttggtgtattgtacgatgtcttaccttgttttt 228  Q
    ||||||||||||||||||||||||||||  |||||||| |||||||    
T  2626608 ggggtcccatcatttggtgtattgtacgcagtcttaccctgttttt 2626563  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 13160787 - 13160726
Alignment:
Q  183 ggggtcccatcatttggtgtattgtacgatgtcttaccttgtttttactcaagaggttgttt 244  Q
    ||||||||| ||||||||||||||||||  | |||||| ||||||||| ||||||| |||||    
T  13160787 ggggtcccaccatttggtgtattgtacgcagccttaccctgtttttacacaagaggctgttt 13160726  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 45071350 - 45071289
Alignment:
Q  183 ggggtcccatcatttggtgtattgtacgatgtcttaccttgtttttactcaagaggttgttt 244  Q
    ||||||||| ||||||||||||||||||  | |||||| ||||||||| ||||||| |||||    
T  45071350 ggggtcccaccatttggtgtattgtacgcagccttaccctgtttttacacaagaggctgttt 45071289  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 44530235 - 44530173
Alignment:
Q  183 ggggtcccatcatttggtgtattgtacgatgtcttaccttg-tttttactcaagaggttgttt 244  Q
    ||||||||| ||||||||||||||||||  | |||||| || ||||||| |||||||||||||    
T  44530235 ggggtcccaccatttggtgtattgtacgcagccttaccctgttttttacacaagaggttgttt 44530173  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 12625976 - 12625913
Alignment:
Q  183 ggggtcccatcatttggtgtattgtacgatgtcttaccttg--tttttactcaagaggttgttt 244  Q
    ||||||||| |||||||||||||||| |  |||||||| ||  ||||||| |||||||||||||    
T  12625976 ggggtcccaccatttggtgtattgtatgcagtcttaccctgtttttttacacaagaggttgttt 12625913  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 5648344 - 5648283
Alignment:
Q  183 ggggtcccatcatttggtgtattgtacgatgtcttaccttgtttttactcaagaggttgttt 244  Q
    ||||||||| ||||||||||||||||||  | |||||| ||||||||| ||||||| |||||    
T  5648344 ggggtcccaccatttggtgtattgtacgcagccttaccctgtttttacacaagaggctgttt 5648283  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 187 - 244
Target Start/End: Complemental strand, 40915910 - 40915853
Alignment:
Q  187 tcccatcatttggtgtattgtacgatgtcttaccttgtttttactcaagaggttgttt 244  Q
    ||||| ||||||||||||||||||  | |||||||||||||||| ||||||| |||||    
T  40915910 tcccaccatttggtgtattgtacgcagccttaccttgtttttacacaagaggctgttt 40915853  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 6430677 - 6430736
Alignment:
Q  185 ggtcccatcatttggtgtattgtacgatgtcttaccttgtttttactcaagaggttgttt 244  Q
    ||||||| ||||||||||||||||||  | |||||| ||||||||| ||||||| |||||    
T  6430677 ggtcccaccatttggtgtattgtacgcagccttaccctgtttttacacaagaggctgttt 6430736  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 20225068 - 20225008
Alignment:
Q  183 ggggtcccatcatttggtgtattgtacgatgtcttaccttgtttttactcaagaggttgttt 244  Q
    ||||||||| ||||||||||||||||||  | |||||| || |||||| |||||||||||||    
T  20225068 ggggtcccaccatttggtgtattgtacgcagccttaccctg-ttttacacaagaggttgttt 20225008  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 49796883 - 49796822
Alignment:
Q  183 ggggtcccatcatttggtgtattgtacgatgtcttaccttgtttttactcaagaggttgttt 244  Q
    ||||||||| ||||||||||||||||||  | |||||| |||||| || ||||||| |||||    
T  49796883 ggggtcccaccatttggtgtattgtacgcagccttaccatgttttaacacaagaggctgttt 49796822  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 54175150 - 54175085
Alignment:
Q  183 ggggtcccatcattt-ggtgtattgtacgatgtcttaccttgtttttactcaagaggttgttttcc 247  Q
    ||||||||| ||||| |||||||||||||  | |||||| ||||||||| ||||||| ||||||||    
T  54175150 ggggtcccaccattttggtgtattgtacgcagccttaccctgtttttacacaagaggctgttttcc 54175085  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 11596621 - 11596560
Alignment:
Q  183 ggggtcccatcatttggtgtattgtacgatgtcttaccttgtttttactcaagaggttgttt 244  Q
    ||||||||| ||||||||||||| ||||  | |||||| ||||||||| |||||||||||||    
T  11596621 ggggtcccaccatttggtgtattatacgcagccttaccctgtttttacacaagaggttgttt 11596560  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 32632606 - 32632667
Alignment:
Q  183 ggggtcccatcatttggtgtattgtacgatgtcttaccttgtttttactcaagaggttgttt 244  Q
    ||||||||| ||||||||||||||||||  | |||||| ||||||||| ||||||| |||||    
T  32632606 ggggtcccaccatttggtgtattgtacgcagccttaccctgtttttacacaagaggctgttt 32632667  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 46248002 - 46248064
Alignment:
Q  183 ggggtcccatcatttggtgtattgtacgatgtcttaccttg-tttttactcaagaggttgttt 244  Q
    ||||||||| ||||||||||||||||||  |||||||| || ||||||| ||||||| |||||    
T  46248002 ggggtcccaccatttggtgtattgtacgcagtcttaccctgttttttacacaagaggctgttt 46248064  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 31382263 - 31382324
Alignment:
Q  183 ggggtcccatcatttggtgtattgtacgatgtcttaccttgtttttactcaagaggttgttt 244  Q
    ||||||||| ||||||||||||||||||  | |||| | ||||||||| ||||||| |||||    
T  31382263 ggggtcccaccatttggtgtattgtacgcagccttatcctgtttttacacaagaggctgttt 31382324  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 41319855 - 41319900
Alignment:
Q  183 ggggtcccatcatttggtgtattgtacgatgtcttaccttgttttt 228  Q
    ||||||||||||||||||||||||||||  | |||||| |||||||    
T  41319855 ggggtcccatcatttggtgtattgtacgcagccttaccctgttttt 41319900  T

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Target: scaffold0057 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 43743 - 43699
Alignment:
Q  183 ggggtcccatcatttggtgtattgtacgatgtcttaccttgtttt 227  Q
    ||||||||| ||||||||||||||||||  | |||||||||||||    
T  43743 ggggtcccaccatttggtgtattgtacgcagccttaccttgtttt 43699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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