View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13115_low_3 (Length: 535)
Name: NF13115_low_3
Description: NF13115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13115_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 518
Target Start/End: Complemental strand, 39339708 - 39339189
Alignment:
| Q |
1 |
aagatagtggtacattgtgtttcgggaaaaatgatagtagtacaatgaaacatgtttacttcaagtctgaagctgtgaatataaaacataaattttaaat |
100 |
Q |
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| T |
39339708 |
aagatagtggtacattgtgtttcgggaaaaatgatagtagtacaatgaaacatgtttacttcaagtctcaagctgtgaatataaaacataaattttaaat |
39339609 |
T |
|
| Q |
101 |
acttgtcaaaagtattaacaagaatatgcttgatcataatcatgctactagctattgctgtaagacaatcctcgatcatgtgctcaacaaggcaatcatc |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||| |
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| T |
39339608 |
acttgtcaaaagtattaacaagaatatgtttgatcataatcatgctactagctattgctgtaaaacaatcctcgatcatgtgctcaataaggcattcatc |
39339509 |
T |
|
| Q |
201 |
aaattgcattagcattaacgattgcataaaacttgaaactaaaattacaaatcaataaggagtgtacaaattcttatctaacaatttgacagcaatttgt |
300 |
Q |
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| T |
39339508 |
aaattgcattagcattaacgattgcataaaacttgaaactaaaattacaaatcagtaaggagtgtacaaattcttatctaacaatttgacagcaatttgt |
39339409 |
T |
|
| Q |
301 |
ttcaattcattaaatgaaataaaatgtatttgnnnnnnnnnnnnnntttgttagggaggaaacaattacaatggtagttggcagacacgttttggtcctc |
400 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39339408 |
ttcaattcattaaatgaaataaaatgtatttgaaaaaaaccaaaaatttgttagggaggaaacaattacaatggtagttggcagacacgttttggtcctc |
39339309 |
T |
|
| Q |
401 |
ttcaatcagaaattgcttgttttacattgcccaccaaattgtcacatcgaaattaatcata--aatctctcgtccacgtacctaaatttgtggtacacat |
498 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
39339308 |
ttcaatcagaaattgcttgttttacattgcccaccaaattgtcgcatcgaaaataatcatatgaatctctcgtccacgtacctaaatttgtggtacacat |
39339209 |
T |
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| Q |
499 |
atagactaaactctagttat |
518 |
Q |
| |
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|||||||| ||||||||||| |
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| T |
39339208 |
atagactagactctagttat |
39339189 |
T |
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