View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13115_low_4 (Length: 509)

Name: NF13115_low_4
Description: NF13115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13115_low_4
NF13115_low_4
[»] chr2 (13 HSPs)
chr2 (60-238)||(7730418-7730602)
chr2 (300-466)||(7717683-7717846)
chr2 (61-193)||(7724277-7724413)
chr2 (300-462)||(7724832-7725007)
chr2 (61-206)||(7716499-7716653)
chr2 (367-466)||(7732324-7732420)
chr2 (236-273)||(7717437-7717474)
chr2 (378-439)||(32635903-32635964)
chr2 (4-59)||(38997313-38997368)
chr2 (5-36)||(1073139-1073170)
chr2 (3-36)||(14382954-14382987)
chr2 (236-268)||(7730611-7730643)
chr2 (380-444)||(45404705-45404769)
[»] chr8 (3 HSPs)
chr8 (370-444)||(29386509-29386583)
chr8 (5-36)||(12272537-12272568)
chr8 (3-36)||(45101078-45101111)
[»] chr7 (6 HSPs)
chr7 (377-444)||(24731753-24731820)
chr7 (3-36)||(33078838-33078871)
chr7 (10-59)||(33508587-33508636)
chr7 (3-36)||(42881344-42881377)
chr7 (377-444)||(7711355-7711422)
chr7 (375-444)||(2048406-2048475)
[»] chr6 (9 HSPs)
chr6 (5-59)||(10883834-10883888)
chr6 (5-59)||(12480279-12480333)
chr6 (377-448)||(6346852-6346923)
chr6 (5-61)||(12512873-12512929)
chr6 (3-59)||(34242234-34242290)
chr6 (377-444)||(2671090-2671157)
chr6 (4-59)||(12501794-12501849)
chr6 (375-421)||(13141317-13141363)
chr6 (380-444)||(14003911-14003975)
[»] chr1 (6 HSPs)
chr1 (3-59)||(31159347-31159403)
chr1 (375-425)||(33153975-33154024)
chr1 (3-59)||(45456204-45456260)
chr1 (377-444)||(20427731-20427798)
chr1 (5-59)||(30878599-30878653)
chr1 (3-36)||(8468307-8468340)
[»] chr4 (11 HSPs)
chr4 (3-59)||(33523233-33523289)
chr4 (377-444)||(2549295-2549362)
chr4 (5-36)||(48506661-48506692)
chr4 (3-36)||(28899318-28899351)
chr4 (3-36)||(34199322-34199355)
chr4 (3-36)||(38173541-38173574)
chr4 (3-36)||(55560532-55560565)
chr4 (3-36)||(56054003-56054036)
chr4 (380-444)||(8573160-8573224)
chr4 (380-444)||(8575279-8575343)
chr4 (3-59)||(33604620-33604676)
[»] chr5 (8 HSPs)
chr5 (377-444)||(15160422-15160489)
chr5 (380-444)||(19615030-19615094)
chr5 (377-444)||(30655174-30655241)
chr5 (377-423)||(4376623-4376669)
chr5 (3-36)||(30648166-30648199)
chr5 (3-59)||(23649221-23649277)
chr5 (3-59)||(23809294-23809350)
chr5 (4-36)||(42807054-42807086)
[»] chr3 (8 HSPs)
chr3 (3-36)||(43473877-43473910)
chr3 (3-59)||(6832348-6832404)
chr3 (3-59)||(48887034-48887090)
chr3 (3-36)||(4045967-4046000)
chr3 (379-444)||(36084521-36084586)
chr3 (3-36)||(41183261-41183294)
chr3 (380-444)||(23358454-23358518)
chr3 (380-444)||(23363275-23363339)
[»] scaffold0054 (1 HSPs)
scaffold0054 (3-36)||(57796-57829)


Alignment Details
Target: chr2 (Bit Score: 101; Significance: 8e-50; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 60 - 238
Target Start/End: Original strand, 7730418 - 7730602
Alignment:
Q  60 atgagattgaaagggtatctactc------atatgaatatagaggctctaggagtaaaatgttccagaactgactttgtggaaacaataaatnnnnnnnt 153  Q
    ||||| ||||||||||||||||||      ||||| ||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||       |    
T  7730418 atgagtttgaaagggtatctactcttgtggatatggatatagaggctatgggagtaaaatgttgcagaactgactttgtggaaacaataaataaaaaaat 7730517  T
Q  154 ggggcaactgactttatgggaaaacgaaaataaaaaactaacattttatatttatcttggtttggcccaatctagtcttacatat 238  Q
    ||  ||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||    
T  7730518 ggaacaactgactttatgggaaaacgaaaataaaaaactaacattttatattactcttgatttggcccaatctagtcttacatat 7730602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 300 - 466
Target Start/End: Original strand, 7717683 - 7717846
Alignment:
Q  300 tatgtgttaattttaataacaaaatgcataaatcaaacactaaaacatatatgagatttagtaacataataaaacaaaaatgttattatttagatttagt 399  Q
    |||||||||||||||||||  ||||| ||||||||| |||||||||||||||||||||||||||||||||||   || ||||||| |||||| |||||||    
T  7717683 tatgtgttaattttaataaataaatgtataaatcaatcactaaaacatatatgagatttagtaacataataa---aataatgttactatttaaatttagt 7717779  T
Q  400 aatatttgataaatgttaggtaaaacccacgttactaaattatttaagtggtagaagatttgagctt 466  Q
    ||||||| |||||| |||||||||| | |||||||||||| ||| ||| ||||||||||||||||||    
T  7717780 aatatttaataaatattaggtaaaatctacgttactaaatgattcaaggggtagaagatttgagctt 7717846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 61 - 193
Target Start/End: Original strand, 7724277 - 7724413
Alignment:
Q  61 tgagattgaaagggtatcta----ctcatatgaatatagaggctctaggagtaaaatgttccagaactgactttgtggaaacaataaatnnnnnnntggg 156  Q
    ||||||||||||||||||||    ||| |||| ||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||       |||     
T  7724277 tgagattgaaagggtatctatctactcttatggatatagaggctctgggagtaaaatgatgcagaactgactttgtggaaacaataaataaaaaaatgga 7724376  T
Q  157 gcaactgactttatgggaaaacgaaaataaaaaacta 193  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  7724377 gcaactcactttatggaaaaacgaaaataaaaaacta 7724413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 300 - 462
Target Start/End: Original strand, 7724832 - 7725007
Alignment:
Q  300 tatgtgttaattttaataacaaaatgcataaatcaaacactaaaacatatatgagatttagtaacat-------------aataaaacaaaaatgttatt 386  Q
    ||||||||||||||||||||||||||||||| | |||||||| || |||||||||||||||||||||             |||| || |||||||||| |    
T  7724832 tatgtgttaattttaataacaaaatgcataagtaaaacactacaatatatatgagatttagtaacatttaaatgttagtaaatacaagaaaaatgttact 7724931  T
Q  387 atttagatttagtaatatttgataaatgttaggtaaaacccacgttactaaattatttaagtggtagaagatttga 462  Q
    ||||| ||||||||||||||||||||||||| ||||| |||   ||||||||| ||| || ||||| |||||||||    
T  7724932 atttaaatttagtaatatttgataaatgttacgtaaagcccgtattactaaatgattcaattggtaaaagatttga 7725007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 61 - 206
Target Start/End: Original strand, 7716499 - 7716653
Alignment:
Q  61 tgagattgaaagggtatctactcatatgaatatagaggctctaggagtaaaatgttccagaa---------ctgactttgtggaaacaataaatnnnnnn 151  Q
    ||||||||||||||||| ||||| |||| |||||||| | || ||||||||||||| |||||         ||||||| ||||||||| || ||          
T  7716499 tgagattgaaagggtatgtactcttatggatatagagaccctgggagtaaaatgttgcagaagcagcagaactgacttcgtggaaacagtatataaaaaa 7716598  T
Q  152 ntggggcaactgactttatgggaaaacgaaaataaaaaactaacattttatattt 206  Q
     ||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  7716599 atggggcaaccgactttatgggaaaacgaaaattaaaaactaacattttatattt 7716653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 367 - 466
Target Start/End: Original strand, 7732324 - 7732420
Alignment:
Q  367 aataaaacaaaaatgttattatttagatttagtaatatttgataaatgttaggtaaaacccacgttactaaattatttaagtggtagaagatttgagctt 466  Q
    ||||||| |||||||||| |||||| ||||||||||||   ||||||||| ||||||  | | |||||||||| ||| |||||||||||| |||||||||    
T  7732324 aataaaaaaaaaatgttactatttaaatttagtaatat---ataaatgtttggtaaagtctatgttactaaatgattcaagtggtagaaggtttgagctt 7732420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 236 - 273
Target Start/End: Original strand, 7717437 - 7717474
Alignment:
Q  236 tatatatgggagaaaagtgggggaactgcctttatggt 273  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7717437 tatatatgggagaaaagtgggggaactgcctttatggt 7717474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 439
Target Start/End: Original strand, 32635903 - 32635964
Alignment:
Q  378 aatgttattatttagatttagtaatatttgataaatgttaggtaaaacccacgttactaaat 439  Q
    ||||||| |||||| ||||||||||||||||||| |||||||||||||| | ||| ||||||    
T  32635903 aatgttactatttaaatttagtaatatttgataagtgttaggtaaaacctatgttgctaaat 32635964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 38997313 - 38997368
Alignment:
Q  4 gaattgaaaaagtggatgttgagggttgttgaaacttttgaatccttgtaaatggt 59  Q
    ||||||||||||||| |||||| |||||||||||||||| || | |||||||||||    
T  38997313 gaattgaaaaagtgggtgttgaaggttgttgaaacttttcaaccattgtaaatggt 38997368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 1073139 - 1073170
Alignment:
Q  5 aattgaaaaagtggatgttgagggttgttgaa 36  Q
    ||||||||||||||||||||||||||||||||    
T  1073139 aattgaaaaagtggatgttgagggttgttgaa 1073170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 14382987 - 14382954
Alignment:
Q  3 ggaattgaaaaagtggatgttgagggttgttgaa 36  Q
    |||||||||||||||||||||||||||| |||||    
T  14382987 ggaattgaaaaagtggatgttgagggtttttgaa 14382954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 268
Target Start/End: Original strand, 7730611 - 7730643
Alignment:
Q  236 tatatatgggagaaaagtgggggaactgccttt 268  Q
    |||||||||||||||| ||||||||||||||||    
T  7730611 tatatatgggagaaaaatgggggaactgccttt 7730643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 444
Target Start/End: Complemental strand, 45404769 - 45404705
Alignment:
Q  380 tgttattatttagatttagtaatatttgataaatgttaggtaaaacccacgttactaaattattt 444  Q
    ||||| ||||||||| | |||| |||||| |||||||||||||| |||  |||||||||| ||||    
T  45404769 tgttactatttagatcttgtaacatttgacaaatgttaggtaaagcccgtgttactaaatgattt 45404705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 370 - 444
Target Start/End: Original strand, 29386509 - 29386583
Alignment:
Q  370 aaaacaaaaatgttattatttagatttagtaatatttgataaatgttaggtaaaacccacgttactaaattattt 444  Q
    |||| |||||||||| ||||||||||||||||||||||||||||| |||||||| |||  |||||||||| ||||    
T  29386509 aaaaaaaaaatgttactatttagatttagtaatatttgataaatggtaggtaaagcccctgttactaaataattt 29386583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 12272537 - 12272568
Alignment:
Q  5 aattgaaaaagtggatgttgagggttgttgaa 36  Q
    ||||||||||||||||||||||||||||||||    
T  12272537 aattgaaaaagtggatgttgagggttgttgaa 12272568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 45101078 - 45101111
Alignment:
Q  3 ggaattgaaaaagtggatgttgagggttgttgaa 36  Q
    |||||||||||||||| |||||||||||||||||    
T  45101078 ggaattgaaaaagtgggtgttgagggttgttgaa 45101111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 377 - 444
Target Start/End: Complemental strand, 24731820 - 24731753
Alignment:
Q  377 aaatgttattatttagatttagtaatatttgataaatgttaggtaaaacccacgttactaaattattt 444  Q
    |||||||| ||||||||| | |||| |||||||||||||||||||||||||| |||||||||| ||||    
T  24731820 aaatgttactatttagatcttgtaacatttgataaatgttaggtaaaacccatgttactaaatgattt 24731753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 33078838 - 33078871
Alignment:
Q  3 ggaattgaaaaagtggatgttgagggttgttgaa 36  Q
    ||||||||||||||||||||||||||||||||||    
T  33078838 ggaattgaaaaagtggatgttgagggttgttgaa 33078871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 33508587 - 33508636
Alignment:
Q  10 aaaaagtggatgttgagggttgttgaaacttttgaatccttgtaaatggt 59  Q
    ||||| ||| |||||||||||||||||||||||||| | |||||||||||    
T  33508587 aaaaaatgggtgttgagggttgttgaaacttttgaaccattgtaaatggt 33508636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 42881377 - 42881344
Alignment:
Q  3 ggaattgaaaaagtggatgttgagggttgttgaa 36  Q
    ||||||||||||||||||||||||||||||||||    
T  42881377 ggaattgaaaaagtggatgttgagggttgttgaa 42881344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 444
Target Start/End: Complemental strand, 7711422 - 7711355
Alignment:
Q  377 aaatgttattatttagatttagtaatatttgataaatgttaggtaaaacccacgttactaaattattt 444  Q
    |||||||| ||||||||| | |||| ||||||| ||||||||||||| |||  |||||||||| ||||    
T  7711422 aaatgttactatttagatcttgtaacatttgatgaatgttaggtaaagcccgtgttactaaatgattt 7711355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 444
Target Start/End: Complemental strand, 2048475 - 2048406
Alignment:
Q  375 aaaaatgttattatttagatttagtaatatttgataaatgttaggtaaaacccacgttactaaattattt 444  Q
    |||||||||| ||||||| ||| |||| ||||||| |||||||||||||  |||  ||||||||| ||||    
T  2048475 aaaaatgttactatttaggtttggtaacatttgattaatgttaggtaaagtccatattactaaatgattt 2048406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 10883888 - 10883834
Alignment:
Q  5 aattgaaaaagtggatgttgagggttgttgaaacttttgaatccttgtaaatggt 59  Q
    |||||||||||||||||||||||||||||||||||||| || | |||||||||||    
T  10883888 aattgaaaaagtggatgttgagggttgttgaaacttttcaaccattgtaaatggt 10883834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 12480333 - 12480279
Alignment:
Q  5 aattgaaaaagtggatgttgagggttgttgaaacttttgaatccttgtaaatggt 59  Q
    |||||||||||||||||||||||||||||||||||||| || | |||||||||||    
T  12480333 aattgaaaaagtggatgttgagggttgttgaaacttttcaaccattgtaaatggt 12480279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 448
Target Start/End: Complemental strand, 6346923 - 6346852
Alignment:
Q  377 aaatgttattatttagatttagtaatatttgataaatgttaggtaaaacccacgttactaaattatttaagt 448  Q
    |||||||| |||||| |||| |||| ||||||||||||||||||||| || | |||||||||| ||||||||    
T  6346923 aaatgttactatttaaattttgtaacatttgataaatgttaggtaaagcctatgttactaaatgatttaagt 6346852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 12512929 - 12512873
Alignment:
Q  5 aattgaaaaagtggatgttgagggttgttgaaacttttgaatccttgtaaatggtat 61  Q
    ||||||||||||||||||| |||||||||||||||||| ||   |||||||||||||    
T  12512929 aattgaaaaagtggatgttcagggttgttgaaacttttcaacaattgtaaatggtat 12512873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 34242290 - 34242234
Alignment:
Q  3 ggaattgaaaaagtggatgttgagggttgttgaaacttttgaatccttgtaaatggt 59  Q
    |||||||||||||||  |||||||||||||||||| ||||||| | |||||||||||    
T  34242290 ggaattgaaaaagtgagtgttgagggttgttgaaagttttgaaccattgtaaatggt 34242234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 444
Target Start/End: Original strand, 2671090 - 2671157
Alignment:
Q  377 aaatgttattatttagatttagtaatatttgataaatgttaggtaaaacccacgttactaaattattt 444  Q
    |||||||| ||||||||| |  |||||||||| |||||||||||||| |||  |||||||||| ||||    
T  2671090 aaatgttactatttagatcttataatatttgacaaatgttaggtaaagcccgtgttactaaatgattt 2671157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 12501849 - 12501794
Alignment:
Q  4 gaattgaaaaagtggatgttgagggttgttgaaacttttgaatccttgtaaatggt 59  Q
    ||||||||||||||| || |||||||||||||||||||| || | || ||||||||    
T  12501849 gaattgaaaaagtgggtggtgagggttgttgaaacttttcaaccattataaatggt 12501794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 421
Target Start/End: Original strand, 13141317 - 13141363
Alignment:
Q  375 aaaaatgttattatttagatttagtaatatttgataaatgttaggta 421  Q
    |||||||||| ||||||||| | |||| |||||||||||||||||||    
T  13141317 aaaaatgttactatttagatctcgtaacatttgataaatgttaggta 13141363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 444
Target Start/End: Original strand, 14003911 - 14003975
Alignment:
Q  380 tgttattatttagatttagtaatatttgataaatgttaggtaaaacccacgttactaaattattt 444  Q
    ||||| ||||||||| | |||| |||||| |||||||||||||| |||  |||||||||| ||||    
T  14003911 tgttactatttagatcttgtaacatttgacaaatgttaggtaaagcccgtgttactaaatgattt 14003975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 31159403 - 31159347
Alignment:
Q  3 ggaattgaaaaagtggatgttgagggttgttgaaacttttgaatccttgtaaatggt 59  Q
    |||||||||||||| ||||||||||||||||||||||||| || | |||||||||||    
T  31159403 ggaattgaaaaagtagatgttgagggttgttgaaacttttcaaccattgtaaatggt 31159347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 425
Target Start/End: Complemental strand, 33154024 - 33153975
Alignment:
Q  375 aaaaatgttattatttagatttagtaatatttgataaatgttaggtaaaac 425  Q
    ||||||||||| ||||||||||| ||||||||||| |||||||||||||||    
T  33154024 aaaaatgttatcatttagatttaataatatttgat-aatgttaggtaaaac 33153975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 45456204 - 45456260
Alignment:
Q  3 ggaattgaaaaagtggatgttgagggttgttgaaacttttgaatccttgtaaatggt 59  Q
    |||||||||||||||| ||||||||||| |||||| |||| || | |||||||||||    
T  45456204 ggaattgaaaaagtgggtgttgagggttattgaaaattttcaaccattgtaaatggt 45456260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 444
Target Start/End: Complemental strand, 20427798 - 20427731
Alignment:
Q  377 aaatgttattatttagatttagtaatatttgataaatgttaggtaaaacccacgttactaaattattt 444  Q
    |||||||| ||||||||| | ||||  ||||| ||||||||||||||||||  |||||||||| ||||    
T  20427798 aaatgttactatttagatcttgtaacttttgacaaatgttaggtaaaacccgtgttactaaataattt 20427731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 30878599 - 30878653
Alignment:
Q  5 aattgaaaaagtggatgttgagggttgttgaaacttttgaatccttgtaaatggt 59  Q
    |||||||||||||| |||||||||||||||||| |||| ||   |||||||||||    
T  30878599 aattgaaaaagtgggtgttgagggttgttgaaaattttaaaatattgtaaatggt 30878653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 8468340 - 8468307
Alignment:
Q  3 ggaattgaaaaagtggatgttgagggttgttgaa 36  Q
    |||||||||||||||| |||||||||||||||||    
T  8468340 ggaattgaaaaagtgggtgttgagggttgttgaa 8468307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 33523289 - 33523233
Alignment:
Q  3 ggaattgaaaaagtggatgttgagggttgttgaaacttttgaatccttgtaaatggt 59  Q
    |||||||||||||||||||||||||||| |||||| |||| || | |||||||||||    
T  33523289 ggaattgaaaaagtggatgttgagggttattgaaaattttcaaccattgtaaatggt 33523233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 377 - 444
Target Start/End: Original strand, 2549295 - 2549362
Alignment:
Q  377 aaatgttattatttagatttagtaatatttgataaatgttaggtaaaacccacgttactaaattattt 444  Q
    |||||||| |||||| || | ||||||||||| ||||||||||||||||||  |||||||||| ||||    
T  2549295 aaatgttactatttaaatcttgtaatatttgacaaatgttaggtaaaacccgtgttactaaatgattt 2549362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 48506661 - 48506692
Alignment:
Q  5 aattgaaaaagtggatgttgagggttgttgaa 36  Q
    ||||||||||||||||||||||||||||||||    
T  48506661 aattgaaaaagtggatgttgagggttgttgaa 48506692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 28899351 - 28899318
Alignment:
Q  3 ggaattgaaaaagtggatgttgagggttgttgaa 36  Q
    |||||||||||||||| |||||||||||||||||    
T  28899351 ggaattgaaaaagtgggtgttgagggttgttgaa 28899318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 34199322 - 34199355
Alignment:
Q  3 ggaattgaaaaagtggatgttgagggttgttgaa 36  Q
    ||||||||||||||||||||||| ||||||||||    
T  34199322 ggaattgaaaaagtggatgttgaaggttgttgaa 34199355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 38173574 - 38173541
Alignment:
Q  3 ggaattgaaaaagtggatgttgagggttgttgaa 36  Q
    |||||||||||||||| |||||||||||||||||    
T  38173574 ggaattgaaaaagtgggtgttgagggttgttgaa 38173541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 55560532 - 55560565
Alignment:
Q  3 ggaattgaaaaagtggatgttgagggttgttgaa 36  Q
    |||||||||||||||||||||||| |||||||||    
T  55560532 ggaattgaaaaagtggatgttgagagttgttgaa 55560565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 56054036 - 56054003
Alignment:
Q  3 ggaattgaaaaagtggatgttgagggttgttgaa 36  Q
    ||||||||||||||||||||| ||||||||||||    
T  56054036 ggaattgaaaaagtggatgttaagggttgttgaa 56054003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 444
Target Start/End: Complemental strand, 8573224 - 8573160
Alignment:
Q  380 tgttattatttagatttagtaatatttgataaatgttaggtaaaacccacgttactaaattattt 444  Q
    ||||| ||||||||| | |||| |||||| |||||||||||||| |||  |||||||||| ||||    
T  8573224 tgttactatttagatcttgtaacatttgacaaatgttaggtaaagcccgtgttactaaatgattt 8573160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 444
Target Start/End: Complemental strand, 8575343 - 8575279
Alignment:
Q  380 tgttattatttagatttagtaatatttgataaatgttaggtaaaacccacgttactaaattattt 444  Q
    ||||| ||||||||| | |||| |||||| |||||||||||||| |||  |||||||||| ||||    
T  8575343 tgttactatttagatcttgtaacatttgacaaatgttaggtaaagcccgtgttactaaatgattt 8575279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 33604676 - 33604620
Alignment:
Q  3 ggaattgaaaaagtggatgttgagggttgttgaaacttttgaatccttgtaaatggt 59  Q
    |||||||||||||||| ||||||||||| |||||| |||| ||   |||||||||||    
T  33604676 ggaattgaaaaagtgggtgttgagggttattgaaaattttcaactattgtaaatggt 33604620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 377 - 444
Target Start/End: Original strand, 15160422 - 15160489
Alignment:
Q  377 aaatgttattatttagatttagtaatatttgataaatgttaggtaaaacccacgttactaaattattt 444  Q
    |||||||| |||||| || | |||| ||||||||||||||||||||| |||| |||||||||| ||||    
T  15160422 aaatgttactatttaaatcttgtaacatttgataaatgttaggtaaagcccatgttactaaatgattt 15160489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 444
Target Start/End: Complemental strand, 19615094 - 19615030
Alignment:
Q  380 tgttattatttagatttagtaatatttgataaatgttaggtaaaacccacgttactaaattattt 444  Q
    ||||| ||||||||| | |||| |||||| |||||||||||||| |||| |||||||||| ||||    
T  19615094 tgttactatttagatcttgtaacatttgacaaatgttaggtaaagcccatgttactaaatgattt 19615030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 444
Target Start/End: Complemental strand, 30655241 - 30655174
Alignment:
Q  377 aaatgttattatttagatttagtaatatttgataaatgttaggtaaaacccacgttactaaattattt 444  Q
    |||||||| ||||||||| | |||| ||||||||||||||||||||| ||   |||||||||| ||||    
T  30655241 aaatgttactatttagatcttgtaacatttgataaatgttaggtaaagccggtgttactaaatgattt 30655174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 423
Target Start/End: Original strand, 4376623 - 4376669
Alignment:
Q  377 aaatgttattatttagatttagtaatatttgataaatgttaggtaaa 423  Q
    |||||||| ||||||||| | |||| |||||||||||||||||||||    
T  4376623 aaatgttactatttagatcttgtaacatttgataaatgttaggtaaa 4376669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 30648166 - 30648199
Alignment:
Q  3 ggaattgaaaaagtggatgttgagggttgttgaa 36  Q
    |||||||||||||||| |||||||||||||||||    
T  30648166 ggaattgaaaaagtgggtgttgagggttgttgaa 30648199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 23649221 - 23649277
Alignment:
Q  3 ggaattgaaaaagtggatgttgagggttgttgaaacttttgaatccttgtaaatggt 59  Q
    |||||||||||||||   |||||||||||||||||||||| || | | |||||||||    
T  23649221 ggaattgaaaaagtgagagttgagggttgttgaaacttttcaaccatcgtaaatggt 23649277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 23809350 - 23809294
Alignment:
Q  3 ggaattgaaaaagtggatgttgagggttgttgaaacttttgaatccttgtaaatggt 59  Q
    |||||||||||||||   |||||||||||||||||||||| || | | |||||||||    
T  23809350 ggaattgaaaaagtgagagttgagggttgttgaaacttttcaaccatcgtaaatggt 23809294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 42807054 - 42807086
Alignment:
Q  4 gaattgaaaaagtggatgttgagggttgttgaa 36  Q
    ||||||||||||||| |||||||||||||||||    
T  42807054 gaattgaaaaagtgggtgttgagggttgttgaa 42807086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 43473910 - 43473877
Alignment:
Q  3 ggaattgaaaaagtggatgttgagggttgttgaa 36  Q
    ||||||||||||||||||||||||||||||||||    
T  43473910 ggaattgaaaaagtggatgttgagggttgttgaa 43473877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 6832404 - 6832348
Alignment:
Q  3 ggaattgaaaaagtggatgttgagggttgttgaaacttttgaatccttgtaaatggt 59  Q
    ||||||||||||||||||||||||||||||| ||| | ||||| |  ||||||||||    
T  6832404 ggaattgaaaaagtggatgttgagggttgttaaaaatgttgaaccaatgtaaatggt 6832348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 48887034 - 48887090
Alignment:
Q  3 ggaattgaaaaagtggatgttgagggttgttgaaacttttgaatccttgtaaatggt 59  Q
    ||||||||||||||||||||||| ||||||||||| |||| || | ||||| |||||    
T  48887034 ggaattgaaaaagtggatgttgaaggttgttgaaaattttcaaccattgtatatggt 48887090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 4046000 - 4045967
Alignment:
Q  3 ggaattgaaaaagtggatgttgagggttgttgaa 36  Q
    ||||||||||||||||||||||| ||||||||||    
T  4046000 ggaattgaaaaagtggatgttgaaggttgttgaa 4045967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 444
Target Start/End: Original strand, 36084521 - 36084586
Alignment:
Q  379 atgttattatttagatttagtaatatttgataaatgttaggtaaaacccacgttactaaattattt 444  Q
    |||||| ||||||||| | |||| |||||| |||||||||||||| || | |||||||||| ||||    
T  36084521 atgttactatttagatctcgtaacatttgacaaatgttaggtaaagcctatgttactaaatgattt 36084586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 41183294 - 41183261
Alignment:
Q  3 ggaattgaaaaagtggatgttgagggttgttgaa 36  Q
    |||||||||||||||| |||||||||||||||||    
T  41183294 ggaattgaaaaagtgggtgttgagggttgttgaa 41183261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 444
Target Start/End: Complemental strand, 23358518 - 23358454
Alignment:
Q  380 tgttattatttagatttagtaatatttgataaatgttaggtaaaacccacgttactaaattattt 444  Q
    ||||| ||||||||| | |||| |||||| |||||||||||||| |||  |||||||||| ||||    
T  23358518 tgttactatttagatcttgtaacatttgacaaatgttaggtaaagcccgtgttactaaatgattt 23358454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 444
Target Start/End: Complemental strand, 23363339 - 23363275
Alignment:
Q  380 tgttattatttagatttagtaatatttgataaatgttaggtaaaacccacgttactaaattattt 444  Q
    ||||| ||||||||| | |||| |||||| |||||||||||||| |||  |||||||||| ||||    
T  23363339 tgttactatttagatcttgtaacatttgacaaatgttaggtaaagcccgtgttactaaatgattt 23363275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 57796 - 57829
Alignment:
Q  3 ggaattgaaaaagtggatgttgagggttgttgaa 36  Q
    |||||||||||||||| |||||||||||||||||    
T  57796 ggaattgaaaaagtgggtgttgagggttgttgaa 57829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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