View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13116_high_11 (Length: 275)
Name: NF13116_high_11
Description: NF13116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13116_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 20 - 265
Target Start/End: Original strand, 1223909 - 1224154
Alignment:
| Q |
20 |
ccggtaacatccacctcgacttcccttactttaccaccgcagacaccgccaccaacctcaccttcctcggcgattcatctctaaccaccaacagcatcgt |
119 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
1223909 |
ccggtaacatccacctcaacttcccttactttaccaccgcagacaccgccaccaacctcaccttcctcggcgattcatctctaaccaccaacggcgtcgt |
1224008 |
T |
|
| Q |
120 |
ttccttaactcaacccaccactttctccaccggtgctatcatctacaaacaccccatttctctctttgacatttcaacaaacaccacgtcttcattctca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1224009 |
ttccttaactcaacccaccactttctccaccggtgctatcatctacaaacaccccatttctctctttgacatttcaacaaacaccacgtcttcattctca |
1224108 |
T |
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| Q |
220 |
acaacgttctctttctctattacaaattcaaatcccacttcctttg |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1224109 |
acaacgttctctttctctattacaaattcaaatcccacttcctttg |
1224154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 265
Target Start/End: Original strand, 41962435 - 41962680
Alignment:
| Q |
20 |
ccggtaacatccacctcgacttcccttactttaccaccgcagacaccgccaccaacctcaccttcctcggcgattcatctctaaccaccaacagcatcgt |
119 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
41962435 |
ccggtaacatccacctcgacttcccttacttcaccaccgcagacaccgccaccaacctcaccttcctcggcgattcatctctaaccaccaacggcgtcgt |
41962534 |
T |
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| Q |
120 |
ttccttaactcaacccaccactttctccaccggtgctatcatctacaaacaccccatttctctctttgacatttcaacaaacaccacgtcttcattctca |
219 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41962535 |
ttccttaactcagcccaccactttctccaccggtgctatcatctacaaacaccccatttctctctttgacatttcaacaaacaccacgtcttcattctca |
41962634 |
T |
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| Q |
220 |
acaacgttctctttctctattacaaattcaaatcccacttcctttg |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41962635 |
acaacgttctctttctctattacaaattcaaatcccacttcctttg |
41962680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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