View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13116_high_6 (Length: 361)
Name: NF13116_high_6
Description: NF13116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13116_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 12 - 342
Target Start/End: Original strand, 2764316 - 2764646
Alignment:
| Q |
12 |
tatactgtcaagcaaaatggtgaattggaaccaagaagaaagaattctacaacatactatcagttcttgcaggaagacgacggaagaaattgatcggtgc |
111 |
Q |
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| T |
2764316 |
tatactgtcaagcaaaatggtgaattggaaccaagaagaaagaattctacaacatactatcagttcttgcaggaagacgacggaagaaattgatcggtgc |
2764415 |
T |
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| Q |
112 |
agatggaagcctgtgtcgaaatctcggatgcctcatgaaatagaaacctgctaaaccagccaccatttgaaaaggagtaacatataacaccaaagcagct |
211 |
Q |
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| T |
2764416 |
agatggaagcctgtgtcgaaatctcggatgcctcatgaaatagaaacctgctaaaccagccaccatttgaaaaggagtaacatataacaccaaagcagct |
2764515 |
T |
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| Q |
212 |
aacaaacagaaagtaatgaataaagaagtagcacgcggatctctccagctcaacagtgcatgaatcctctcaccctggctagccaaatcacctacaaccg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2764516 |
aacaaacagaaagtaatgaataaagaagtagcacgcggatctctccagctcaacagtgcatgaatcctctcaccctggctagccaaatcacctacaacgg |
2764615 |
T |
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| Q |
312 |
tttgtattctaccagccacactcctcaaacg |
342 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
2764616 |
tttgtattctaccagccacactcctcaaacg |
2764646 |
T |
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