View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13116_low_1 (Length: 837)

Name: NF13116_low_1
Description: NF13116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13116_low_1
NF13116_low_1
[»] chr7 (14 HSPs)
chr7 (649-830)||(35765891-35766072)
chr7 (262-418)||(35765564-35765726)
chr7 (18-171)||(35765374-35765525)
chr7 (482-608)||(35765727-35765856)
chr7 (649-827)||(35755259-35755443)
chr7 (649-816)||(35798847-35799011)
chr7 (649-788)||(35760411-35760550)
chr7 (674-827)||(35785413-35785569)
chr7 (649-827)||(35789219-35789394)
chr7 (523-608)||(35760267-35760352)
chr7 (523-593)||(35785277-35785347)
chr7 (533-594)||(35789088-35789149)
chr7 (375-464)||(35798506-35798593)
chr7 (67-116)||(35802031-35802080)


Alignment Details
Target: chr7 (Bit Score: 170; Significance: 9e-91; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 9e-91
Query Start/End: Original strand, 649 - 830
Target Start/End: Original strand, 35765891 - 35766072
Alignment:
Q  649 attcatctgatactcactagtgccatgatgatatccagggttcttagaccatgacatgttgtctctccttctgttatatccatcccatgttccccaattc 748  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35765891 attcatctgatagtcactagtgccatgatgatatccagggttcttagaccatgacatgttgtctctccttctgttatatccatcccatgttccccaattc 35765990  T
Q  749 ccattcccaccatttcttccttgatacttgttatgcaagttgccaccaaagcgctccctctgaatccacctttgagaattat 830  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35765991 ccactcccaccatttcttccttgatacttgttatgcaagttgccaccaaagcgctccctctgaatccgcctttgagaattat 35766072  T

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Target: chr7; HSP #2
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 262 - 418
Target Start/End: Original strand, 35765564 - 35765726
Alignment:
Q  262 taatgtggaagaagtggtagactacataaagaatccactgta------aaggagcaaatataatcaaagagtgaagaatgaaaaaatttaaccttattta 355  Q
    ||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35765564 taatgtggaagaagtggtagactacataaagaatccactgtatgcacaaaggagcaaatataatcaaagagtgaagaatgaaaaaatttaaccttattta 35765663  T
Q  356 acttaaattgcagatttcttatttcaataatatcattactaatgcactgtatcatcgatcacc 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  35765664 acttaaattgcagatttcttatttcaataatatcattactaatgcactgtatcatagatcacc 35765726  T

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Target: chr7; HSP #3
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 35765374 - 35765525
Alignment:
Q  18 tttggtgtccctctcttcacatgataaaccaagtttgtgttgtaagcttattgcattatcaagtgaagttactgtcccaccagatgaagggcaaccacta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35765374 tttggtgtccctctcttcacatgataaaccaagtttgtgttgtaagcttattgcattatcaagtgaagttactgtcccaccagatgaagagcaaccacta 35765473  T
Q  118 tgttaatatacaactatgttcaaagaccctacacacctactttctccaatgctg 171  Q
    ||||||||||||||||||||||||||||||  |||||||||| |||||||||||    
T  35765474 tgttaatatacaactatgttcaaagaccct--acacctacttgctccaatgctg 35765525  T

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Target: chr7; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 482 - 608
Target Start/End: Original strand, 35765727 - 35765856
Alignment:
Q  482 attaatactgaaaaaacaattgttct---atgatataaatctcacataggagtcctttcttgcagtccaaggcatctgatcttcatttaccatgcactag 578  Q
    ||||||||||||||||| ||||||||   ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  35765727 attaatactgaaaaaaccattgttcttatatgatataaatctcacataggagtcctttcttgcagtccaaagcatctgatcttcatttaccatgcactag 35765826  T
Q  579 gagtaggtaccttgtctgcataagcaaaat 608  Q
    |||||| |||||||||||||||||||||||    
T  35765827 gagtagttaccttgtctgcataagcaaaat 35765856  T

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Target: chr7; HSP #5
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 649 - 827
Target Start/End: Original strand, 35755259 - 35755443
Alignment:
Q  649 attcatctgatactcactagtgccatgatgatatccagggttcttagaccatgacatgttgt---ctctccttctgttatatccatcccatgttccccaa 745  Q
    |||||||||||||||| || |||||| ||||| | ||||| |||||||||||||||||||||   ||||||||||| |||||||||||||||||||||||    
T  35755259 attcatctgatactcattattgccataatgattttcagggctcttagaccatgacatgttgttttctctccttctgctatatccatcccatgttccccaa 35755358  T
Q  746 ttcccattcccaccatttcttcc---ttgatacttgttatgcaagttgccaccaaagcgctccctctgaatccacctttgagaat 827  Q
    |||||| ||||||||||||||||   ||| ||||||||||||||||  |||||| || ||||||||||||||||||| |||||||    
T  35755359 ttcccactcccaccatttcttccttgttggtacttgttatgcaagtcaccaccatagtgctccctctgaatccacctctgagaat 35755443  T

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Target: chr7; HSP #6
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 649 - 816
Target Start/End: Original strand, 35798847 - 35799011
Alignment:
Q  649 attcatctgatactcactagtgccatgatgatatccagggttcttagaccatgacatgttg---tctctccttctgttatatccatcccatgttccccaa 745  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||   ||| || ||||||||||||||||||||||||||||     
T  35798847 attcatctgatactcattagtgccatgatgatatccagggttcttagaccaagacatgttgttttctttctttctgttatatccatcccatgttcccca- 35798945  T
Q  746 ttcccattcccaccatttcttccttgatacttgttatgcaagttgccaccaaagcgctccctctgaatcca 816  Q
         ||| |||| |||||||||||||||||||||||| ||||  |||||| | |||||||||||| ||||    
T  35798946 -----atttccactatttcttccttgatacttgttatgaaagtcaccaccatatcgctccctctgattcca 35799011  T

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Target: chr7; HSP #7
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 649 - 788
Target Start/End: Original strand, 35760411 - 35760550
Alignment:
Q  649 attcatctgatactcactagtgccatgatgatatccagggttcttagaccatgacatgttgtctctccttctgttatatccatcccatgttccccaattc 748  Q
    |||||||||||| ||| |||| ||||||| || ||| ||||| |||||||| |||||||| |||||| ||||||||||||||||||||| |||||||||     
T  35760411 attcatctgatattcattagtaccatgataatgtccggggttattagaccacgacatgttttctctctttctgttatatccatcccatgctccccaattt 35760510  T
Q  749 ccattcccaccatttcttccttgatacttgttatgcaagt 788  Q
    |||| ||| |||||||||||||||||||||||||||||||    
T  35760511 ccatgcccgccatttcttccttgatacttgttatgcaagt 35760550  T

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Target: chr7; HSP #8
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 674 - 827
Target Start/End: Original strand, 35785413 - 35785569
Alignment:
Q  674 tgatgatatccagggttcttagaccatgacatgttgt---ctctccttctgttatatccatcccatgttccccaattcccattcccaccatttcttcctt 770  Q
    |||||||| ||||||||| ||||||  ||||| ||||   ||||| |||||||||| |||||||||||| ||||||| | ||||| ||||||||||||||    
T  35785413 tgatgataaccagggttcatagaccgagacatcttgttttctctctttctgttatacccatcccatgttgcccaattactattccaaccatttcttcctt 35785512  T
Q  771 gatacttgttatgcaagttgccaccaaagcgctccctctgaatccacctttgagaat 827  Q
    |||| ||||||||||||||||||||| ||  |||||||||||||||||| |||||||    
T  35785513 gatatttgttatgcaagttgccaccatagttctccctctgaatccacctctgagaat 35785569  T

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Target: chr7; HSP #9
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 649 - 827
Target Start/End: Original strand, 35789219 - 35789394
Alignment:
Q  649 attcatctgatactcactagtgccatgatgatatccagggttcttagaccatgacatgttg---tctctccttctgttatatccatcccatgttccccaa 745  Q
    |||||||||||||||| |||| ||||||| ||||||||||||| |||||||||| ||||||   ||||||||||||||||||||||||||||| |||||     
T  35789219 attcatctgatactcattagttccatgatcatatccagggttcgtagaccatgatatgttgttttctctccttctgttatatccatcccatgtccccca- 35789317  T
Q  746 ttcccattcccaccatttcttccttgatacttgttatgcaagttgccaccaaagcgctccctctgaatccacctttgagaat 827  Q
         ||| |||| |||||||||||||||||||||||| ||||  |||||| |  ||||||||||| |||| | ||||||||    
T  35789318 -----atttccactatttcttccttgatacttgttatgaaagtcaccaccatattgctccctctgattccatccttgagaat 35789394  T

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Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 523 - 608
Target Start/End: Original strand, 35760267 - 35760352
Alignment:
Q  523 cataggagtcctttcttgcagtccaaggcatctgatcttcatttaccatgcactaggagtaggtaccttgtctgcataagcaaaat 608  Q
    ||||||||||||| | |||||||||||||   ||||||||||||||||||||| |||||||| |||||| ||  |||||| |||||    
T  35760267 cataggagtccttgcatgcagtccaaggcccttgatcttcatttaccatgcaccaggagtagctaccttttccacataagaaaaat 35760352  T

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Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 523 - 593
Target Start/End: Original strand, 35785277 - 35785347
Alignment:
Q  523 cataggagtcctttcttgcagtccaaggcatctgatcttcatttaccatgcactaggagtaggtaccttgt 593  Q
    |||| ||||| || |||||||| ||||| || |||||||||||||||||||| ||||||||| ||||||||    
T  35785277 catatgagtctttgcttgcagtacaaggtatttgatcttcatttaccatgcagtaggagtagctaccttgt 35785347  T

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Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 533 - 594
Target Start/End: Original strand, 35789088 - 35789149
Alignment:
Q  533 ctttcttgcagtccaaggcatctgatcttcatttaccatgcactaggagtaggtaccttgtc 594  Q
    |||||||| |||||||||||| |||| |||||| ||||||||| |||||||| |||||||||    
T  35789088 ctttcttgtagtccaaggcatttgatattcattcaccatgcacaaggagtagctaccttgtc 35789149  T

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Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 375 - 464
Target Start/End: Original strand, 35798506 - 35798593
Alignment:
Q  375 tatttcaataatatcattactaatgcactgtatcatcgatcaccgcaaaaatatttcttaacctaaacaagcaccaaaagaccatatagc 464  Q
    |||||||||||||||| |||||||||| || ||||||  ||||| || |  |||||||||| ||  |||| |||||||||||||||||||    
T  35798506 tatttcaataatatcagtactaatgcattggatcatcagtcaccacacaggtatttcttaaact--acaaacaccaaaagaccatatagc 35798593  T

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Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 35802031 - 35802080
Alignment:
Q  67 attgcattatcaagtgaagttactgtcccaccagatgaagggcaaccact 116  Q
    |||||||||||| ||||||||||||||||  |||||||||| ||||||||    
T  35802031 attgcattatcaggtgaagttactgtcccgtcagatgaaggccaaccact 35802080  T

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