View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13116_low_10 (Length: 306)

Name: NF13116_low_10
Description: NF13116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13116_low_10
NF13116_low_10
[»] chr2 (2 HSPs)
chr2 (13-287)||(22723541-22723815)
chr2 (27-128)||(30934450-30934552)
[»] scaffold0624 (1 HSPs)
scaffold0624 (134-287)||(4318-4483)
[»] chr8 (1 HSPs)
chr8 (17-129)||(14864357-14864469)
[»] chr5 (3 HSPs)
chr5 (67-129)||(23030167-23030229)
chr5 (89-129)||(13158499-13158539)
chr5 (13-45)||(23028851-23028883)
[»] chr3 (3 HSPs)
chr3 (67-129)||(19889996-19890058)
chr3 (82-129)||(25060410-25060457)
chr3 (67-129)||(35444041-35444103)
[»] chr1 (5 HSPs)
chr1 (13-129)||(32107044-32107161)
chr1 (13-129)||(26466679-26466797)
chr1 (13-129)||(24011952-24012068)
chr1 (89-129)||(25230846-25230886)
chr1 (90-129)||(13201552-13201591)
[»] chr6 (2 HSPs)
chr6 (71-129)||(12950918-12950976)
chr6 (90-129)||(12901839-12901878)
[»] chr4 (2 HSPs)
chr4 (71-129)||(13900880-13900938)
chr4 (13-129)||(6182225-6182337)
[»] chr7 (1 HSPs)
chr7 (75-129)||(3761437-3761491)


Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 13 - 287
Target Start/End: Complemental strand, 22723815 - 22723541
Alignment:
Q  13 aatatttggtttgtcttcaaccttaggcggtgtaaactctctggaattgttgacaaaataggttttgtttcaaccagatcatcatctgcgttttcaacca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22723815 aatatttggtttgtcttcaaccttaggcggtgtaaactctctggaattgttgacaaaataggttttgtttcaaccagatcatcatctgcgttttcaacca 22723716  T
Q  113 taactataaataaacaattttttcgaaatctacgtatacagcttcaaacatatatcaaggataaacaaacaagtgtaaaatatttcaaaggttcatactg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22723715 taactataaataaacaattttttcgaaatctacgtatacagcttcaaacatatatcaaggataaacaaacaagtgtaaaatatttcaaaggttcatactg 22723616  T
Q  213 ccttttattttgctgctggatgatttattttatgagcaaagtcaatttaccaaaaagagactataagcacccgca 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22723615 ccttttattttgctgctggatgatttattttatgagcaaagtcaatttaccaaaaagagactataagcacccgca 22723541  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 128
Target Start/End: Complemental strand, 30934552 - 30934450
Alignment:
Q  27 cttcaaccttaggcggtgtaaactctctggaattgttgacaaaa-taggttttgtttcaaccagatcatcatctgcgttttcaaccataactataaataa 125  Q
    ||||||||||||| ||| ||||||| |   |||  ||||||||| |||||| |||||||| | |||||| ||  || || ||||||||||||||||||||    
T  30934552 cttcaaccttaggtggtttaaactccccaaaataattgacaaaactaggttatgtttcaatcggatcattattcgcattctcaaccataactataaataa 30934453  T
Q  126 aca 128  Q
    |||    
T  30934452 aca 30934450  T

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Target: scaffold0624 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0624
Description:

Target: scaffold0624; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 134 - 287
Target Start/End: Complemental strand, 4483 - 4318
Alignment:
Q  134 ttcgaaatctacgtatacagcttcaaacatatatcaaggataaacaaacaagtgtaaaatatttcaaaggttcatac------tgccttttat----ttt 223  Q
    |||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||      ||||||||||    |||    
T  4483 ttcgaaatctacgtatacagcttcaaacgtatattaaggatatacaaacaagtgtaaaatatttcaaaggttcatactgccactgccttttatttaattt 4384  T
Q  224 gctgctggatgatttattttatgagcaaagtcaa--tttaccaaaaagagactataagcacccgca 287  Q
    |||||||| |||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||    
T  4383 gctgctgggtgatttattttatgagcaaagtcaatttttactaaaaagagactataagcacccgca 4318  T

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Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 14864357 - 14864469
Alignment:
Q  17 tttggtttgtcttcaaccttaggcggtgtaaactctctggaattgttgacaaaataggttttgtttcaaccagatcatcatctgcgttttcaaccataac 116  Q
    ||||||||| |||||||||||||| |||| | |||||||||||| ||| |||||   | ||||| |||||| |||||||||||| |||||||||||||||    
T  14864357 tttggtttgacttcaaccttaggcagtgtgacctctctggaattattggcaaaaatagatttgtctcaaccggatcatcatctgtgttttcaaccataac 14864456  T
Q  117 tataaataaacaa 129  Q
    |||||||||||||    
T  14864457 tataaataaacaa 14864469  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 23030167 - 23030229
Alignment:
Q  67 aaaataggttttgtttcaaccagatcatcatctgcgttttcaaccataactataaataaacaa 129  Q
    |||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  23030167 aaaataggttttgtctcaaccagatcatcatctgtgttttcagccataactataaataaacaa 23030229  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 13158499 - 13158539
Alignment:
Q  89 gatcatcatctgcgttttcaaccataactataaataaacaa 129  Q
    |||||||||| ||||| |||||||||||||| |||||||||    
T  13158499 gatcatcatccgcgttctcaaccataactatgaataaacaa 13158539  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 23028851 - 23028883
Alignment:
Q  13 aatatttggtttgtcttcaaccttaggcggtgt 45  Q
    ||||||||||||| |||||||||||||||||||    
T  23028851 aatatttggtttggcttcaaccttaggcggtgt 23028883  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 19889996 - 19890058
Alignment:
Q  67 aaaataggttttgtttcaaccagatcatcatctgcgttttcaaccataactataaataaacaa 129  Q
    |||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||    
T  19889996 aaaataggttttgtctcaaccggatcatcatctgtgttttcaaccataactataaataaacaa 19890058  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 25060410 - 25060457
Alignment:
Q  82 tcaaccagatcatcatctgcgttttcaaccataactataaataaacaa 129  Q
    ||||||||||||||| |||| || ||||||||||||||||||||||||    
T  25060410 tcaaccagatcatcacctgcattatcaaccataactataaataaacaa 25060457  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 35444041 - 35444103
Alignment:
Q  67 aaaataggttttgtttcaaccagatcatcatctgcgttttcaaccataactataaataaacaa 129  Q
    |||||| ||| ||| ||||| ||||| ||||| | ||||||||||||||||||||||||||||    
T  35444041 aaaatatgttatgtctcaactagatcttcatccgtgttttcaaccataactataaataaacaa 35444103  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 32107044 - 32107161
Alignment:
Q  13 aatatttggtttgtcttcaaccttaggcggtgtaaactctctggaattgttgac-aaaataggttttgtttcaaccagatcatcatctgcgttttcaacc 111  Q
    ||||||||||||| ||||||||||||||||| | |  |||| | |||| | ||| |||||||||||||| ||||||  ||||||||||| ||  ||||||    
T  32107044 aatatttggtttgacttcaaccttaggcggtttgacatctccgaaattatcgacaaaaataggttttgtctcaaccgcatcatcatctgtgtactcaacc 32107143  T
Q  112 ataactataaataaacaa 129  Q
    ||||||||||||| ||||    
T  32107144 ataactataaatatacaa 32107161  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 26466679 - 26466797
Alignment:
Q  13 aatatttggtttgtcttcaacctt-aggcggtgtaaactctctggaattgttgacaaaa-taggttttgtttcaaccagatcatcatctgcgttttcaac 110  Q
    ||||||| |||||||||||||||| || |||| | |  |||| |||||| | ||||||| | |||||||||||  || ||||| |||| ||||| |||||    
T  26466679 aatatttagtttgtcttcaacctttagacggtttgacatctccggaattttcgacaaaaattggttttgtttctcccggatcaccatccgcgttctcaac 26466778  T
Q  111 cataactataaataaacaa 129  Q
    ||| |||||||||||||||    
T  26466779 cattactataaataaacaa 26466797  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 24012068 - 24011952
Alignment:
Q  13 aatatttggtttgtcttcaaccttaggcggtgtaaactctctggaattgttgacaaaataggttttgtttcaaccagatcatcatctgcgttttcaacca 112  Q
    ||||||| |||||  |||||||||||| ||||| |||||||   | || | |||||||||  |||||| |||| |  ||||| |||  ||||||||||||    
T  24012068 aatatttagtttgaattcaaccttaggtggtgtgaactctccaaagttatcgacaaaatatattttgtctcaatcgaatcataatccacgttttcaacca 24011969  T
Q  113 taactataaataaacaa 129  Q
    |||| ||||||||||||    
T  24011968 taaccataaataaacaa 24011952  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 25230886 - 25230846
Alignment:
Q  89 gatcatcatctgcgttttcaaccataactataaataaacaa 129  Q
    ||||||||||  |||||||||||||||||||||||||||||    
T  25230886 gatcatcatccacgttttcaaccataactataaataaacaa 25230846  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 129
Target Start/End: Complemental strand, 13201591 - 13201552
Alignment:
Q  90 atcatcatctgcgttttcaaccataactataaataaacaa 129  Q
    ||||||||||| |||||||| |||||||||||||||||||    
T  13201591 atcatcatctgtgttttcaatcataactataaataaacaa 13201552  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 129
Target Start/End: Complemental strand, 12950976 - 12950918
Alignment:
Q  71 taggttttgtttcaaccagatcatcatctgcgttttcaaccataactataaataaacaa 129  Q
    |||||||| | |||||| |||||||||| || |||||||||||||||||||||||||||    
T  12950976 taggttttttctcaaccggatcatcatccgcattttcaaccataactataaataaacaa 12950918  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 129
Target Start/End: Complemental strand, 12901878 - 12901839
Alignment:
Q  90 atcatcatctgcgttttcaaccataactataaataaacaa 129  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  12901878 atcatcatctgcattttcaaccataactataaataaacaa 12901839  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 129
Target Start/End: Original strand, 13900880 - 13900938
Alignment:
Q  71 taggttttgtttcaaccagatcatcatctgcgttttcaaccataactataaataaacaa 129  Q
    |||||||||  ||||||||||||||||| |  |||| ||||||||||||||||||||||    
T  13900880 taggttttggatcaaccagatcatcatccggattttaaaccataactataaataaacaa 13900938  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 6182337 - 6182225
Alignment:
Q  13 aatatttggtttgtcttcaaccttaggcggtgtaaactctctggaattgttgac-aaaataggttttgtttcaaccagatcatcatctgcgttttcaacc 111  Q
    ||||||||  ||| ||||||||||||||||||| |  |||| | |||| |  || |||||||||||||| |||||     ||||||| |||||||||| |    
T  6182337 aatatttgacttgacttcaaccttaggcggtgtgacatctccgaaattatcaacaaaaataggttttgtctcaac-----catcatccgcgttttcaatc 6182243  T
Q  112 ataactataaataaacaa 129  Q
    ||||||||||||||||||    
T  6182242 ataactataaataaacaa 6182225  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 3761491 - 3761437
Alignment:
Q  75 ttttgtttcaaccagatcatcatctgcgttttcaaccataactataaataaacaa 129  Q
    |||||| |||||  |||||||||| || || ||||||||||||||||||||||||    
T  3761491 ttttgtctcaactggatcatcatccgcattctcaaccataactataaataaacaa 3761437  T

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