View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13116_low_13 (Length: 266)
Name: NF13116_low_13
Description: NF13116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13116_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 5 - 250
Target Start/End: Original strand, 4137424 - 4137671
Alignment:
| Q |
5 |
gagaagcatagggctgtgaagtgaaagatgtacgtgtatcttcgcctctgaaacttaagaatacgtcgtgtttgattccactgtctggaatatattcatc |
104 |
Q |
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| T |
4137424 |
gagaagcataaggctgtgaagtgaaagatgtacgtgtatcttcgcctctgaaacttaagaatacgtcgtgtttgattccactgtctggaatatattcatc |
4137523 |
T |
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| Q |
105 |
agaaaaggaactggtagcggaagacatagatggatctatgaaatttgatttcgagatcgatctatggattttggatgtacttttcagttactgtttaaag |
204 |
Q |
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| T |
4137524 |
agaaaaggaactggtagcggaagacatagatggatctatgaaatttgatttcgagatcgatctatggattttggatgtacttttcagttaatgtttaaaa |
4137623 |
T |
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| Q |
205 |
actttctgcagaacaac--ttaacgctatgtctagatctgttcagatt |
250 |
Q |
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| T |
4137624 |
actttctgcagaacaacttttaacgctatgtctagatctgttcagatt |
4137671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 5107969 - 5108035
Alignment:
| Q |
5 |
gagaagcatagggctgtgaagtgaaagatgtacgtgtatcttcgcctctgaaacttaagaatacgtc |
71 |
Q |
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| T |
5107969 |
gagaagcatagagatgtgaagtgaaggaagcacgagtatctttgcctctgaaacttaggaacacgtc |
5108035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 5149891 - 5149951
Alignment:
| Q |
5 |
gagaagcatagggctgtgaagtgaaagatgtacgtgtatcttcgcctctgaaacttaagaa |
65 |
Q |
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| T |
5149891 |
gagaagcatagagatgtgaagtgaatgatgcgcgcgtatcttcccctctaaaacttaagaa |
5149951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 5422118 - 5422058
Alignment:
| Q |
5 |
gagaagcatagggctgtgaagtgaaagatgtacgtgtatcttcgcctctgaaacttaagaa |
65 |
Q |
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||||||||||| | ||||||||||| |||| ||| ||||| || ||||| ||||||||||| |
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| T |
5422118 |
gagaagcatagagatgtgaagtgaatgatgcacgagtatcctctcctctaaaacttaagaa |
5422058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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