View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13116_low_17 (Length: 232)
Name: NF13116_low_17
Description: NF13116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13116_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 64 - 216
Target Start/End: Complemental strand, 45386762 - 45386610
Alignment:
| Q |
64 |
ctgctgcaactccaccgcctccagcagagattttgctgagaattttcatgcattgtgaaggctgtgctcggaaagttcgtcggtcattgaaagattttcc |
163 |
Q |
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| T |
45386762 |
ctgctgcaactccaccgcctccagcagagattttgctgagagttttcatgcattgtgaaggctgtgctcggaaagttcgtcggtcattgaaagattttcc |
45386663 |
T |
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| Q |
164 |
aggtgttgaagaagtgataactgattgcaaatctcatatggtggttgtgaaag |
216 |
Q |
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| T |
45386662 |
aggtgttgaagaagtgataactgattgcaaatctcatatggtggttgtgaaag |
45386610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 81 - 216
Target Start/End: Complemental strand, 45391114 - 45390979
Alignment:
| Q |
81 |
cctccagcagagattttgctgagaattttcatgcattgtgaaggctgtgctcggaaagttcgtcggtcattgaaagattttccaggtgttgaagaagtga |
180 |
Q |
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| T |
45391114 |
cctccggcagagattttgctgaaagttttcatgcattgtgaaagctgtgctcggaaagttcgtcggtcgttgaaagattttccaggtgttgaagaagtga |
45391015 |
T |
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| Q |
181 |
taactgattgcaaatctcatatggtggttgtgaaag |
216 |
Q |
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| T |
45391014 |
taactgattgcaagtctcatacggtggttgtgaaag |
45390979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 81 - 216
Target Start/End: Complemental strand, 734722 - 734587
Alignment:
| Q |
81 |
cctccagcagagattttgctgagaattttcatgcattgtgaaggctgtgctcggaaagttcgtcggtcattgaaagattttccaggtgttgaagaagtga |
180 |
Q |
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| T |
734722 |
cctccggcagagattttgctgaaagttttcatgcattgtgaaagctgtgctcggaaagttcgtcggtcgttgaaagattttccaggtgttgaagaagtga |
734623 |
T |
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| Q |
181 |
taactgattgcaaatctcatatggtggttgtgaaag |
216 |
Q |
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| T |
734622 |
tagctgattgcaagtctcatacggtggttgtgaaag |
734587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 167
Target Start/End: Complemental strand, 40578224 - 40578165
Alignment:
| Q |
108 |
ttcatgcattgtgaaggctgtgctcggaaagttcgtcggtcattgaaagattttccaggt |
167 |
Q |
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| T |
40578224 |
ttcatgcattgtgaaggttgtgctcgtaaagttcgtcgttcactcaaaggttttccaggt |
40578165 |
T |
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