View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13116_low_18 (Length: 232)
Name: NF13116_low_18
Description: NF13116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13116_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 216
Target Start/End: Complemental strand, 35817111 - 35816911
Alignment:
| Q |
16 |
ttctcaaatctcaactacttggcattggttcacattatatttaatgaatttgaccttgtgcatgttggcgttgcaacagctgggtgaattgggtttcatc |
115 |
Q |
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| T |
35817111 |
ttctcaaatctcaactacttggcattggttcacattatatttaatgaatttgaccttgtgcatgttggcgttgcaacagctgggtgaattgggtttcatc |
35817012 |
T |
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| Q |
116 |
attacgtcctctttcccacaaggaaatgcttattgttgtgaggggtgtttgacaagaaacgcaagaattctatgtggcagcatgtaacacttacaaataa |
215 |
Q |
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| T |
35817011 |
attacgtcctctttcccacaaggaaatgcttattgttgtgaggggtgtttgacaagaaacgcaagaattctatgtggcagcatgtaacacttacaaataa |
35816912 |
T |
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| Q |
216 |
t |
216 |
Q |
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| T |
35816911 |
t |
35816911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 36744566 - 36744491
Alignment:
| Q |
141 |
atgcttattgttgtgaggggtgtttgacaagaaacgcaagaattctatgtggcagcatgtaacacttacaaataat |
216 |
Q |
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| T |
36744566 |
atgcttattgttacgagagaagtttgacaagaaacttaagaatccattgtggcagcatgtaacacttacaaataat |
36744491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 15517127 - 15517053
Alignment:
| Q |
139 |
aaatgcttattgttgtgaggggtgtttgacaagaaacgcaagaattctatgtggcagcatgtaacacttacaaat |
213 |
Q |
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| T |
15517127 |
aaatgcttattgttatgagagaaatttgacaagaaacacaagaatcttatgtggcagcatgcaacacttacaaat |
15517053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 15533638 - 15533564
Alignment:
| Q |
139 |
aaatgcttattgttgtgaggggtgtttgacaagaaacgcaagaattctatgtggcagcatgtaacacttacaaat |
213 |
Q |
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| T |
15533638 |
aaatggttattgttatgagagaagtttgacaagaaacacaagaatcttatgtggcagcatgcaacacttacaaat |
15533564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 23693118 - 23693167
Alignment:
| Q |
167 |
acaagaaacgcaagaattctatgtggcagcatgtaacacttacaaataat |
216 |
Q |
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| T |
23693118 |
acaagaaacgcaagaatcctatgtggcaccatgtaactctttcaaataat |
23693167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 8459014 - 8459064
Alignment:
| Q |
163 |
tttgacaagaaacgcaagaattctatgtggcagcatgtaacacttacaaat |
213 |
Q |
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| T |
8459014 |
tttgataagaaacacaaaaattctatgtggtagcatgtaacactcacaaat |
8459064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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