View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13116_low_5 (Length: 634)
Name: NF13116_low_5
Description: NF13116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13116_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 158 - 550
Target Start/End: Original strand, 31835611 - 31836000
Alignment:
| Q |
158 |
cattattcaccctcc-attttaaaaacctttctagacttgttggtagataattttcgatcgccactaaatttacacacaaacttaacatacacagtgtcc |
256 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31835611 |
cattattcaccctcccattttaaaaacctttctagacttgttggtagataattttcgatcgccactaaatttacacacaaacttaacataca--gtgtcc |
31835708 |
T |
|
| Q |
257 |
tcactttggaatgagtatatatgacaaaggggtctctaacttggaagataaaggggtaga-agttttgaagactaaagtctgtaatctattttaatcatt |
355 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31835709 |
tcactttggtatgagtatatatgacaaagtggtctctaacttggaagataaaggggtgtctagatttgaagactaaagtctgtaatctattttaatcatt |
31835808 |
T |
|
| Q |
356 |
aaaagaaaattaaaaagtgatcttcatatgtatgtattttgtacataaaacaatgctaaaacggttttaagataagtgacattcgttatgagccaattgg |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31835809 |
aaaagaaaattaaaaagtgatcttcatatg----tattttgtacataaaacaatgctaaaacggttttaagataagtgacattcgttatgagccaattgg |
31835904 |
T |
|
| Q |
456 |
ctcattgtcacctaacaataccaaataacatttgtcatt-aaaaaataaagggtcaattagttcattgtcagccaataatagaagagtaactttgc |
550 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31835905 |
ctcattgtcacctaacaatatgaaataacatttgtcattaaaaaaataaagggttaattagttcattgtcagacaataatagaagagtaactttgc |
31836000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 31835454 - 31835543
Alignment:
| Q |
1 |
aatataggatggaagaagtactaaaaagagatttgaccatactccaataagtgaagtaatttacaaaatctaaatacctaagcaatactt |
90 |
Q |
| |
|
||||||| | ||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31835454 |
aatatagaacggaagaagtactaaaaagaaatatgaccatactccaataagcgaagtaatttacaaaatctaaatacctaagcaatactt |
31835543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University