View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13116_low_6 (Length: 437)

Name: NF13116_low_6
Description: NF13116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13116_low_6
NF13116_low_6
[»] chr3 (4 HSPs)
chr3 (70-283)||(45588186-45588408)
chr3 (374-431)||(45588498-45588555)
chr3 (55-161)||(35085101-35085209)
chr3 (17-49)||(45588159-45588191)
[»] chr1 (4 HSPs)
chr1 (53-161)||(34972838-34972949)
chr1 (127-161)||(19027601-19027635)
chr1 (95-161)||(10029877-10029943)
chr1 (128-156)||(5947889-5947917)
[»] scaffold0299 (1 HSPs)
scaffold0299 (97-161)||(3726-3790)
[»] chr7 (2 HSPs)
chr7 (97-161)||(27873969-27874033)
chr7 (95-157)||(37707495-37707557)
[»] chr4 (3 HSPs)
chr4 (95-159)||(7740801-7740865)
chr4 (126-161)||(18172354-18172389)
chr4 (96-159)||(18174923-18174986)
[»] chr5 (1 HSPs)
chr5 (95-161)||(19284972-19285038)
[»] scaffold0002 (2 HSPs)
scaffold0002 (97-161)||(295981-296045)
scaffold0002 (96-159)||(294992-295055)


Alignment Details
Target: chr3 (Bit Score: 167; Significance: 3e-89; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 70 - 283
Target Start/End: Original strand, 45588186 - 45588408
Alignment:
Q  70 tttttagtcacaaattcgtcattaatgtattactgagagatttgattcattattgggggattaattctgccaataataaccaaaattcttgtgctggttg 169  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||    
T  45588186 tttttagtcacaaatccgtcattaatgtattactgagagatttgattcatttttgggggattaattccgccaataataaccaaaattcttgtactggttg 45588285  T
Q  170 aaggatcattttgtctctaaagtgaaaagttattaggattaactt---------tctatttttcttataaaaaataacgaggtaacataaactagttaaa 260  Q
    ||| |||||||||||||||||||||||||||||||||||||||||         |||||||||||||| |||||||||||||||||||||||||||||||    
T  45588286 aagaatcattttgtctctaaagtgaaaagttattaggattaactttctcaaaaatctatttttcttattaaaaataacgaggtaacataaactagttaaa 45588385  T
Q  261 aatcaatttttgttaacgattga 283  Q
    |||||||||||||||||||||||    
T  45588386 aatcaatttttgttaacgattga 45588408  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 374 - 431
Target Start/End: Original strand, 45588498 - 45588555
Alignment:
Q  374 tgtaattggttgttgtcatttctgttacaggaacttaacttggatggcttcatctcac 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45588498 tgtaattggttgttgtcatttctgttacaggaacttaacttggatggcttcatatcac 45588555  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 161
Target Start/End: Complemental strand, 35085209 - 35085101
Alignment:
Q  55 tattactaggggatctttttagtcacaaattc-gtcattaatgt--attactgagagatttgattcattattgggggattaattctgccaataataacca 151  Q
    |||||||  |||||| |||| ||||||||||| |||| ||||||  |||| |||| |||||||| || || || ||||||| ||| ||||||||||||||    
T  35085209 tattactgagggatcgttttcgtcacaaattctgtcagtaatgtgtatta-tgagggatttgatacactactgagggattagttccgccaataataacca 35085111  T
Q  152 aaattcttgt 161  Q
    ||||| ||||    
T  35085110 aaatttttgt 35085101  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 45588159 - 45588191
Alignment:
Q  17 aagatgtaggtgcgtttatttatgatattttta 49  Q
    |||||||||||||||||||||||| ||||||||    
T  45588159 aagatgtaggtgcgtttatttatggtattttta 45588191  T

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Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 53 - 161
Target Start/End: Original strand, 34972838 - 34972949
Alignment:
Q  53 aatattactaggggatctttttagtcacaaattc-gtcattaatgt--attactgagagatttgattcattattgggggattaattctgccaataataac 149  Q
    |||||||||| ||||||||||| ||||||||||| |||| ||||||  |||||| || |||||||| || || || ||||||||||| ||||||||||||    
T  34972838 aatattactaagggatctttttcgtcacaaattccgtcagtaatgtgtattactcagggatttgatacactactgagggattaattccgccaataataac 34972937  T
Q  150 caaaattcttgt 161  Q
    ||||||| ||||    
T  34972938 caaaattattgt 34972949  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 161
Target Start/End: Original strand, 19027601 - 19027635
Alignment:
Q  127 ggattaattctgccaataataaccaaaattcttgt 161  Q
    |||||||||||||||||||||||||||||||||||    
T  19027601 ggattaattctgccaataataaccaaaattcttgt 19027635  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 10029943 - 10029877
Alignment:
Q  95 tgtattactgagagatttgattcattattgggggattaattctgccaataataaccaaaattcttgt 161  Q
    ||||||| |||| |||||||| || || || ||||||||||  ||||||||||| ||||||||||||    
T  10029943 tgtattaatgagggatttgatacactactgagggattaatttcgccaataataatcaaaattcttgt 10029877  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 156
Target Start/End: Original strand, 5947889 - 5947917
Alignment:
Q  128 gattaattctgccaataataaccaaaatt 156  Q
    |||||||||||||||||||||||||||||    
T  5947889 gattaattctgccaataataaccaaaatt 5947917  T

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Target: scaffold0299 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 3726 - 3790
Alignment:
Q  97 tattactgagagatttgattcattattgggggattaattctgccaataataaccaaaattcttgt 161  Q
    ||||||||||  ||||| ||| ||| || |||||||||| |||||||||||||||||||||||||    
T  3726 tattactgaggtatttgtttcgttactgagggattaattttgccaataataaccaaaattcttgt 3790  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 27873969 - 27874033
Alignment:
Q  97 tattactgagagatttgattcattattgggggattaattctgccaataataaccaaaattcttgt 161  Q
    |||||||||| |||||  ||||||| || || |||||||| ||||||||||||||||||||||||    
T  27873969 tattactgagggatttctttcattactgaggaattaattccgccaataataaccaaaattcttgt 27874033  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 157
Target Start/End: Original strand, 37707495 - 37707557
Alignment:
Q  95 tgtattactgagagatttgattcattattgggggattaattctgccaataataaccaaaattc 157  Q
    |||| ||||||| ||| |||| || || || | ||||||||||||||||||||||||||||||    
T  37707495 tgtactactgagggatatgatacactactgagagattaattctgccaataataaccaaaattc 37707557  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 7740801 - 7740865
Alignment:
Q  95 tgtattactgagagatttgattcattattgggggattaattctgccaataataaccaaaattctt 159  Q
    |||||||||||| |||||||| || || || |||||||| | |||||||||||||||||||||||    
T  7740801 tgtattactgagggatttgatacactactgagggattaaatatgccaataataaccaaaattctt 7740865  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 161
Target Start/End: Complemental strand, 18172389 - 18172354
Alignment:
Q  126 gggattaattctgccaataataaccaaaattcttgt 161  Q
    |||||||||||| |||||||||||||||||||||||    
T  18172389 gggattaattctaccaataataaccaaaattcttgt 18172354  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 159
Target Start/End: Complemental strand, 18174986 - 18174923
Alignment:
Q  96 gtattactgagagatttgattcattattgggggattaattctgccaataataaccaaaattctt 159  Q
    ||||||||||| |||||  |||||||  | | |||||||||||||||||||| |||||||||||    
T  18174986 gtattactgagggatttctttcattaccgagagattaattctgccaataatagccaaaattctt 18174923  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 161
Target Start/End: Complemental strand, 19285038 - 19284972
Alignment:
Q  95 tgtattactgagagatttgattcattattgggggattaattctgccaataataaccaaaattcttgt 161  Q
    |||||||||||| |||||||| || || || |||||||| |||||||||||| | ||||||||||||    
T  19285038 tgtattactgagggatttgatacactactgagggattaaatctgccaataatgatcaaaattcttgt 19284972  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 295981 - 296045
Alignment:
Q  97 tattactgagagatttgattcattattgggggattaattctgccaataataaccaaaattcttgt 161  Q
    ||||||||||  ||||  ||| ||| || |||||||||||||| |||||||||||||||||||||    
T  295981 tattactgaggtatttctttcgttactgagggattaattctgcaaataataaccaaaattcttgt 296045  T

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Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 159
Target Start/End: Original strand, 294992 - 295055
Alignment:
Q  96 gtattactgagagatttgattcattattgggggattaattctgccaataataaccaaaattctt 159  Q
    ||||||||||| |||||  |||||||  | |||||||||| ||||||||||| |||||||||||    
T  294992 gtattactgagggatttctttcattaccgagggattaattatgccaataatagccaaaattctt 295055  T

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