View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13116_low_8 (Length: 354)
Name: NF13116_low_8
Description: NF13116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13116_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 27683000 - 27683284
Alignment:
| Q |
1 |
caccttttttatttcatagatccc-atcaaaacgttcttggtctttaacatgtaacaaatctggacgtccgaatnnnnnnntattatatctatgatttgc |
99 |
Q |
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|||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| | ||| |
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| T |
27683000 |
caccttttttgtttcataaatccccatcaaaacgttcttggtctttaacatgtaacaaatctggacgtccgcataaaaaagtattatatctatggtctgc |
27683099 |
T |
|
| Q |
100 |
ttaaacttttccatcatgnnnnnnnnnnctcattttccatgctaaacctcacccaaatataaatatttgaagttcctacttta---------aaatataa |
190 |
Q |
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||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
27683100 |
ttaaacttttccatcataaaaaacaactctcatttttcatgctaaacctcacccaaatataaatatttgaagttcctactttaaaatatttaaaatataa |
27683199 |
T |
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| Q |
191 |
actatccgatcttgatacaaatccaactaccataatgcatgtcaaatataaatccttgcattttccccataatttatgatgaatt |
275 |
Q |
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|||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
27683200 |
actatccgatcttgatacaaattcaactaccaaaatgcatgtcaaatataaattcttgcattttcctcataatttatgatgaatt |
27683284 |
T |
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