View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13116_low_9 (Length: 329)
Name: NF13116_low_9
Description: NF13116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13116_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 27 - 314
Target Start/End: Complemental strand, 2357781 - 2357494
Alignment:
| Q |
27 |
ttagggtttctttgattatcacttgaaggtacaccaacttatttatatccgactttgttacacatttatctcttccaacgtggaagtcaagttctgcttt |
126 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2357781 |
ttagggtttctttgattatcgcttgaaggtacaccaacttgtttatatccgactttgttacacatttatctcttccaacgtggaagtcaagttctgcttt |
2357682 |
T |
|
| Q |
127 |
tgctttttccaatgtatgaggatttttcaataacaaacatattgcccaagtaagggtaatagcacttgtgtcaattcctcctgcaattagtgactgtaaa |
226 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2357681 |
tgctttttccaatgtatgaggatttttcagtaacaaacatattgcccaagtaagggtaatagcacttgtgtcaattcctcctgcaattagtgactgtaaa |
2357582 |
T |
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| Q |
227 |
tgaagtgaaaattttataaaaatgtgtataagagtaagtttaaataaaattcaaacatgtatcaattgaagcaaagtgtttggtaagt |
314 |
Q |
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| T |
2357581 |
tgaagtgaaaattttataaaaatgtgtataagagtaagtttaaataaaattcaaacatgtatcaattgaagcaaagtgtttggtaagt |
2357494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 27 - 232
Target Start/End: Complemental strand, 2363096 - 2362891
Alignment:
| Q |
27 |
ttagggtttctttgattatcacttgaaggtacaccaacttatttatatccgactttgttacacatttatctcttccaacgtggaagtcaagttctgcttt |
126 |
Q |
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|||| |||||||||| ||| ||||||||||||||||||| | |||||| |||||| ||||||| | ||| ||||||| || ||||||||| |||| |
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| T |
2363096 |
ttagtgtttctttgactatggcttgaaggtacaccaacttgtctatatctgactttcttacacacctctcttttccaacttgagcatcaagttcttcttt |
2362997 |
T |
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| Q |
127 |
tgctttttccaatgtatgaggatttttcaataacaaacatattgcccaagtaagggtaatagcacttgtgtcaattcctcctgcaattagtgactgtaaa |
226 |
Q |
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| T |
2362996 |
tgcttttttcaatattagaggatttctaagcaacaaacatattgcccatgtaagggtaacgctagttgtttcaattcctcccccgattagtgtctgtaaa |
2362897 |
T |
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| Q |
227 |
tgaagt |
232 |
Q |
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||||| |
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| T |
2362896 |
agaagt |
2362891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 207
Target Start/End: Complemental strand, 2351465 - 2351285
Alignment:
| Q |
27 |
ttagggtttctttgattatcacttgaaggtacaccaacttatttatatccgactttgttacacatttatctcttccaacgtggaagtcaagttctgcttt |
126 |
Q |
| |
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||||||||||||| | ||| |||||||||| ||||||||| |||||||||| ||||| | ||| | |||||||| |||||||||| |||| |
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| T |
2351465 |
ttagggtttcttttactatagcttgaaggtataccaacttaccaatatccgactcgtttacaagcctttctttgccaacgtgagtgtcaagttcttcttt |
2351366 |
T |
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| Q |
127 |
tgctttttccaatgtatgaggatttttcaataacaaacatattgcccaagtaagggtaatagcacttgtgtcaattcctcc |
207 |
Q |
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|||||||| |||| | ||||||||||||||| |||||||||||||| ||||| |||| | |||||||||| ||||||| |
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| T |
2351365 |
tgcttttttcaatacaagaggatttttcaatagtaaacatattgcccatgtaagagtaacactacttgtgtcacttcctcc |
2351285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 185
Target Start/End: Complemental strand, 2368842 - 2368684
Alignment:
| Q |
27 |
ttagggtttctttgattatcacttgaaggtacaccaacttatttatatccgactttgttacacatttatctcttccaacgtggaagtcaagttctgcttt |
126 |
Q |
| |
|
||||||||||||||| || ||||||| ||||||||||| | ||| || | || | ||||||| | ||| ||||||| || ||||||||| |||| |
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| T |
2368842 |
ttagggtttctttgacaatggcttgaagatacaccaacttgtctatgtctgtctctcttacacacctctcttttccaacttgagtatcaagttcttcttt |
2368743 |
T |
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| Q |
127 |
tgctttttccaatgtatgaggatttttcaataacaaacatattgcccaagtaagggtaa |
185 |
Q |
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||||||||||||| | |||||||| | | |||||||||||||||||| |||||||||| |
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| T |
2368742 |
tgctttttccaatattagaggatttctaagtaacaaacatattgcccatgtaagggtaa |
2368684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 183
Target Start/End: Complemental strand, 2307242 - 2307175
Alignment:
| Q |
116 |
agttctgcttttgctttttccaatgtatgaggatttttcaataacaaacatattgcccaagtaagggt |
183 |
Q |
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|||||| ||||||||||||||| | | ||||||| ||||||| |||||||| |||||| |||||||| |
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| T |
2307242 |
agttcttcttttgctttttccattacaagaggattgttcaatagcaaacatagtgcccatgtaagggt |
2307175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 27 - 232
Target Start/End: Complemental strand, 4305794 - 4305589
Alignment:
| Q |
27 |
ttagggtttctttgattatcacttgaaggtacaccaacttatttatatccgactttgttacacatttatctcttccaacgtggaagtcaagttctgcttt |
126 |
Q |
| |
|
||||||||||||||| |||| |||||||||| |||||||| | ||||||||||| | ||||||| | ||| | ||||| |||| |||||||||| ||| |
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| T |
4305794 |
ttagggtttctttgactatcgcttgaaggtataccaacttgtctatatccgactcttttacacacctctctttgccaacttggatgtcaagttcttcttg |
4305695 |
T |
|
| Q |
127 |
tgctttttccaatgtatgaggatttttcaataacaaacatattgcccaagtaagggtaatagcacttgtgtcaattcctcctgcaattagtgactgtaaa |
226 |
Q |
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||||||||| | | | ||||||||| || ||||||||| |||||||| ||||||| | | | ||||||||| |||||||||||| |||| || |||| |
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| T |
4305694 |
tgctttttctattacaagaggattttccagtaacaaacacattgcccatataagggtgacactagttgtgtcaactcctcctgcaatcagtgtctttaaa |
4305595 |
T |
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| Q |
227 |
tgaagt |
232 |
Q |
| |
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||||| |
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| T |
4305594 |
cgaagt |
4305589 |
T |
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