View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13117_high_1 (Length: 486)
Name: NF13117_high_1
Description: NF13117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13117_high_1 |
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| [»] chr1 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 9 - 486
Target Start/End: Original strand, 3744366 - 3744836
Alignment:
| Q |
9 |
atcatcaattatgctagcccaaagctcgttccgtagaaggatttatcgcgtcaaaagtagcaagacatagtgaataaaatatccaacttaaaacaagaaa |
108 |
Q |
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| T |
3744366 |
atcatcaattatgctagctcaaagctcgttccgtagaaggatttatcgcgtcataagtagcaagacatagcgaataaaatatccaacttaaaacaagaaa |
3744465 |
T |
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| Q |
109 |
acatatgctaaatttaatcaaatacatcatatttccctctcttaatccacaattactaattcaaaatcaagaacaaagaacaagaacaatcacaatcaca |
208 |
Q |
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| T |
3744466 |
acatatgctaaatttaatcaaatacatcatatttctctctcttaatccacaattactaattcaaaatcaaga-------acaagaacaatcaaaatcaca |
3744558 |
T |
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| Q |
209 |
gaaacagaataactgcattgcaaatcaaaattactaatttttattacatcaaaccaaataccatcacacaagcacgaccttaaaaaacaacctggtactc |
308 |
Q |
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| T |
3744559 |
gaaacagaataactgcattgcaaatcaaaattactaatttttattacatcaaaccaaataccatcacacaagcacgaccttaaaaaacaacctagtactc |
3744658 |
T |
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| Q |
309 |
ttctgcccccaaagaccatcacacatacactacatcattattcaaaacaaaaattcaagcaatctgaacttgaatggttctgggcttcttaggctgagga |
408 |
Q |
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| T |
3744659 |
ttctgcccccaaagaccatcacacatacactacatcattattcaaaacaaaaattcaagcaacctgaacctgaatggttctaggtttcttaggctgagga |
3744758 |
T |
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| Q |
409 |
ggaggcaatttctgaacagtaacactcagaaccccatcttgagaaacagcagaaacagcatcagtattagcattctca |
486 |
Q |
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| T |
3744759 |
ggaggcaatttctgaacagtaacactcagaaccccatcttgacaaacagcagaaacagcatcagtattagcattctca |
3744836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 406
Target Start/End: Complemental strand, 4084497 - 4084453
Alignment:
| Q |
362 |
ttcaagcaatctgaacttgaatggttctgggcttcttaggctgag |
406 |
Q |
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| T |
4084497 |
ttcaagcaatctgaacctgaatagttctgggtttcttaggctgag |
4084453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 363 - 465
Target Start/End: Original strand, 48302914 - 48303016
Alignment:
| Q |
363 |
tcaagcaatctgaacttgaatggttctgggcttcttaggctgaggaggaggcaatttctgaacagtaacactcagaaccccatcttgagaaacagcagaa |
462 |
Q |
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| T |
48302914 |
tcaagcaaccttaacctgaatagttttaggcttcttaggttcaggaggaggcaacttattaacagtaacagtaagaacaccatcttgacaaacagcagaa |
48303013 |
T |
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| Q |
463 |
aca |
465 |
Q |
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| T |
48303014 |
aca |
48303016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 402 - 486
Target Start/End: Complemental strand, 10462434 - 10462347
Alignment:
| Q |
402 |
ctgaggaggaggcaatttct---gaacagtaacactcagaaccccatcttgagaaacagcagaaacagcatcagtattagcattctca |
486 |
Q |
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| T |
10462434 |
ctgaggaggaggcaatttcttgagagcagtaacagtaagcaccccatctcgacacacagccgaaacagcatcagcattagcattctca |
10462347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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