View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13117_high_2 (Length: 321)
Name: NF13117_high_2
Description: NF13117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13117_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 5920733 - 5921032
Alignment:
| Q |
1 |
agaaacaaaaggagtgacttggacatggttggtggtggcatttgaagtagaagggagagatgatgaggaaaccaaactagcatgttgtagcaa-ggaaac |
99 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||| |
|
|
| T |
5920733 |
agaaacaaaaggagtgacttggatatggttggtggtggaatttgaagtagaagggagagatgatgaggaaaccaaacttgcctgttgtagcaaaggaaac |
5920832 |
T |
|
| Q |
100 |
aagttgagtatattgctctggagacaaacaagtaccagaacctgtagagccccccaaaccatgatccaatgcaccattttcatcaaggatctcatgagta |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5920833 |
aagttgagtatattgctctggagacaaacaggtaccagaacctgtagagccccccaaaccatgatccaatgcaccattttcatcaaggatctcatgagta |
5920932 |
T |
|
| Q |
200 |
gctgcatttactctagattgttgcttaggaaaactagggtggccatgtttttgataacaaaaatcaactgtgtgattagtcttgtgacaaaaggtgcaat |
299 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5920933 |
gctgcatttcctcttgattgttgcttaggaaaactagggtagccatgtttttgataacaaaaatcaattgtgtgattagtcttgtgacaaaaggtgcaat |
5921032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 26968778 - 26968721
Alignment:
| Q |
71 |
accaaactagcatgttgtagcaaggaaacaagttgagtatattgctctggagacaaac |
128 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||| |||||||||| |||| |||| |
|
|
| T |
26968778 |
accaaactagcctgttgtagcaaggaaactagttgagcatattgctcttgagataaac |
26968721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 297
Target Start/End: Complemental strand, 17118969 - 17118914
Alignment:
| Q |
242 |
ccatgtttttgataacaaaaatcaactgtgtgattagtcttgtgacaaaaggtgca |
297 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||| |||||| | |||| ||||| |
|
|
| T |
17118969 |
ccatgtttttgataacaaaaatcaacagtatgattattcttgttaaaaaatgtgca |
17118914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 2 - 297
Target Start/End: Original strand, 20325043 - 20325335
Alignment:
| Q |
2 |
gaaacaaaaggagtgacttggacatggttggtggtggcatttgaagtagaagggagagatgatgaggaaaccaaactagcatgttgtagcaaggaaacaa |
101 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||| ||||||||||||| ||| ||||||||||||||| ||||||||| || || ||||||||||||| |
|
|
| T |
20325043 |
gaaacaaaaggagtggtttggacatgattggtggtagcatttgaagtaggaggaggagatgatgaggaaatcaaactagcctgctgcagcaaggaaacaa |
20325142 |
T |
|
| Q |
102 |
gttgagtatattgctctggagacaaacaagtaccagaacctgtagagccccccaaaccatgatccaatgcaccattttcatcaaggatctcatgagtagc |
201 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
20325143 |
gttgagtatattgctctggagacaaactagtaccagaacctgtagagccccccaaaccatgatccaatgcaccattttcatcagggatctcatgagaa-- |
20325240 |
T |
|
| Q |
202 |
tgcatttactctagattgttgcttaggaaaactagggtggccatgtttttgataacaaaaatcaactgtgtgattagtcttgtgacaaaaggtgca |
297 |
Q |
| |
|
||| | ||| ||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
20325241 |
-gcagtcactttagattgttgcttaggaaaactaggatgaccatgtagttgataacaaaaatcaactgtgtgattagttttgtgacaaaaagtgca |
20325335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 15756259 - 15756210
Alignment:
| Q |
242 |
ccatgtttttgataacaaaaatcaactgtgtgattagtcttgtgacaaaa |
291 |
Q |
| |
|
|||||||||||||| ||||| || | ||||||||||||||||||||||| |
|
|
| T |
15756259 |
ccatgtttttgatagcaaaattccaaagtgtgattagtcttgtgacaaaa |
15756210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University