View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13117_low_3 (Length: 302)
Name: NF13117_low_3
Description: NF13117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13117_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 9 - 286
Target Start/End: Complemental strand, 29612201 - 29611917
Alignment:
| Q |
9 |
aggagcagagaccaaaaacctcaatttgtactcaccgttgattgtaatcccaagt--------attgactt-cttgaaaaagcagggaacgaatgtgtgt |
99 |
Q |
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| T |
29612201 |
aggaacagaaaccaaaaacctcaatttgtactcaccgttgattgtggtcccaagtgattcagtaatgattgacttgaaaaagcagggaacgaatctgtgt |
29612102 |
T |
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| Q |
100 |
aggggtgcagttgtcctgaaaacatgcacatcaaataaaaactttgtgttagatatttgttagaatttgtgtaggtagttagaagttaattatgattaga |
199 |
Q |
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| T |
29612101 |
agtagtgcagttgtcctgaaaacatgcacatcaaataaaaact--gtgttagatatttgttagaatttgtttaggtagttagaagttaattatgattaga |
29612004 |
T |
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| Q |
200 |
tggaagtttattatgttagttaacttgggatcacaatataaagttgtatcctaccgtaattgtatcatattctttggtctattaatt |
286 |
Q |
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| T |
29612003 |
tggaagtttattatgttagttaacttgggatcacaatataaaggtgtatcctaccgtaattgtatcatattctttggtctattaatt |
29611917 |
T |
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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 184 - 273
Target Start/End: Original strand, 38467139 - 38467228
Alignment:
| Q |
184 |
gttaattatgattagatggaagtttattatgttagttaacttgggatcacaatataaagttgtatcctaccgtaattgtatcatattctt |
273 |
Q |
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| T |
38467139 |
gttagttatgattaggtggaaatttgttatgttagttaacttgggatcactatataaagatgtatcctaccctaattgaatcatattctt |
38467228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 175 - 273
Target Start/End: Complemental strand, 17236659 - 17236561
Alignment:
| Q |
175 |
tagttagaagttaattatgattagatggaagtttattatgttagttaacttgggatcacaatataaagttgtatcctaccgtaattgtatcatattctt |
273 |
Q |
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| T |
17236659 |
tagttagaagttagttatgattaggtggaagttaattatgttagttaccttgggatcactgtataaaggtatatcttactctaatcgtatcatattctt |
17236561 |
T |
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