View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13117_low_4 (Length: 251)
Name: NF13117_low_4
Description: NF13117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13117_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 4773717 - 4773885
Alignment:
| Q |
1 |
tggacggttactattcaccatatccttcgagaaggaaattcatgtgcagacattcttcctaagttgggagttgatagttcataccattttatcatagtca |
100 |
Q |
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| T |
4773717 |
tggacggttactattcaccatatcctttgagaaggaaattcatgtgcagacgttcttcctaagttgggagttgatagttcataccattttatcacagtca |
4773816 |
T |
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| Q |
101 |
atgaacctccctcttgtttatcttccgctttaatgggttttcttaggtgtgtttttttataaggacctag |
170 |
Q |
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| T |
4773817 |
atgaacccccctcttgtttatcttccgctttaatgggttttcttaggtgtg-ttctttataaggacctag |
4773885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 2465678 - 2465562
Alignment:
| Q |
19 |
catatccttcgagaaggaaattcatgtgcagacattcttcctaagttgggagttgatagttcataccattttatcatagtcaatgaacctccctcttgtt |
118 |
Q |
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||||||| |||||||| ||||| ||||||||| |||| |||||||||||| | |||||||||||||| || |||| |||||||| |||||||||||| |
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| T |
2465678 |
catatccctcgagaagaaaatttatgtgcagatgttctcactaagttgggagctaatagttcataccatcttgtcatggtcaatgagtctccctcttgtt |
2465579 |
T |
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| Q |
119 |
tatcttccgctttaatg |
135 |
Q |
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|||| || |||||||| |
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| T |
2465578 |
tatcatctactttaatg |
2465562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 2147845 - 2147731
Alignment:
| Q |
8 |
ttactattcaccatatccttcgagaaggaaattcatgtgcagacattcttcctaagttgggagttgatagttcataccattttatcatagtcaatgaacc |
107 |
Q |
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| T |
2147845 |
ttactattcaccatatccttcgagaaggaatttcatgtgcagacgttctctttaagttggtagttaatagttcagaccatcctatcacggtcaatgagtc |
2147746 |
T |
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| Q |
108 |
tccctcttgtttatc |
122 |
Q |
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|||| ||| |||||| |
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| T |
2147745 |
tcccccttatttatc |
2147731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 26487699 - 26487813
Alignment:
| Q |
7 |
gttactattcaccatatccttcgagaaggaaattcatgtgcagacattcttcctaagttgggagttgatagttcataccattttatcatagtcaatgaac |
106 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||| | || ||||||| || || ||| ||||||||| |
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| T |
26487699 |
gttactatttaccatatccttcgagaaggaaattcatgtgcagacgttctcgctaagttggga-ctaatggttcataatatcttgtcacggtcaatgaat |
26487797 |
T |
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| Q |
107 |
ctccctcttgtttatc |
122 |
Q |
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||||||||| |||||| |
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| T |
26487798 |
ctccctcttatttatc |
26487813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 44403745 - 44403632
Alignment:
| Q |
8 |
ttactattcaccatatccttcgagaaggaaattcatgtgcagacattcttcctaagttgggagttgatagttcataccattttatcatagtcaatgaacc |
107 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||||||||||||||| |||| |||||| || || | |||||| | ||||| ||||||| || |||||||| |
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| T |
44403745 |
ttactatttaccatatc-ttcgagaacgaaattcatgtgcagacgttctcgctaagtgggaagctaatagtttagaccatcttatcatggttaatgaacc |
44403647 |
T |
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| Q |
108 |
tccctcttgtttatc |
122 |
Q |
| |
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|||||| | |||||| |
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| T |
44403646 |
tccctcctatttatc |
44403632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 2904213 - 2904078
Alignment:
| Q |
1 |
tggacggttactattcaccatatccttcgagaaggaaattcatgtgcagacattcttcctaagttgggagttgatagttcataccattttatcatagtca |
100 |
Q |
| |
|
||||| ||||||| |||||||| ||||| |||||||||||||| |||| || |||| |||||||||||| | ||| |||| ||||| |||||| |||| |
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| T |
2904213 |
tggacagttactagtcaccatacccttcaagaaggaaattcatatgcaaacgttctcgctaagttgggagctaataattcagaccatcttatcacggtca |
2904114 |
T |
|
| Q |
101 |
atgaacctccctcttgtttatcttccgctttaatgg |
136 |
Q |
| |
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||| | |||| ||| |||||| | |||||||||| |
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| T |
2904113 |
atgggcttcccccttatttatcatttgctttaatgg |
2904078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 50654589 - 50654486
Alignment:
| Q |
1 |
tggacggttactattcaccatatccttcgagaaggaaattcatgtgcagacattcttcctaagttgggagttgatagttcataccattttatcatagtca |
100 |
Q |
| |
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||||| ||||||||||| |||||||| ||||||| |||||||||||||||| ||||| ||||| || ||| | ||||||| ||||| || ||| |||| |
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| T |
50654589 |
tggacagttactattcatcatatcctacgagaagaaaattcatgtgcagacgttcttgctaagctgagagctagtagttcagaccatcttgtcacggtca |
50654490 |
T |
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| Q |
101 |
atga |
104 |
Q |
| |
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|||| |
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|
| T |
50654489 |
atga |
50654486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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