View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13118_high_12 (Length: 272)
Name: NF13118_high_12
Description: NF13118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13118_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 260
Target Start/End: Complemental strand, 42673547 - 42673306
Alignment:
| Q |
19 |
aagtactcctttgaaaacaggtccatatccaccttcaccaattttgccatccatatcaaagtaatttgttgcaacttcaatttcttcaatattgtatctt |
118 |
Q |
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| T |
42673547 |
aagtactcctttgaaaacaggtccatatccaccttcaccaattttgccatccatatcaaagtaatttgttgcaacttcaatttcttcaatattgtatctt |
42673448 |
T |
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| Q |
119 |
ttaaatataaatttgttgcgttcaatttcatttgatgttgtcattctttcttcttcatcttcttcatgcacattaattaccttctgtttcgcgaaaccag |
218 |
Q |
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| T |
42673447 |
ttaaatataaatttgttgcgttcaatttcatttgatgttgtcattctttcttcttcatcttcttcatgcacattaattaccttctgtttcgcgaaaccag |
42673348 |
T |
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| Q |
219 |
cttctctaccaactgacgctgacctactcttcttttttgttc |
260 |
Q |
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| T |
42673347 |
cttctctaccaactgacgctgacctactcttcttttttgttc |
42673306 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 6516154 - 6516070
Alignment:
| Q |
26 |
cctttgaaaacaggtccatatccaccttcaccaattttgccatccatatcaaagtaatttgttgcaacttcaatttcttcaatat |
110 |
Q |
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| T |
6516154 |
cctttaaaaacaggtccataccccccttcaccaattttgagagcattgtcaaagccattagttgcaacttgaatttctttaatat |
6516070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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