View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13118_high_2 (Length: 455)
Name: NF13118_high_2
Description: NF13118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13118_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 40 - 438
Target Start/End: Original strand, 48070121 - 48070527
Alignment:
| Q |
40 |
atagaattataacctcatataacattaattagagtaatgatatttaaacaacaaaaagttgacaatggtnnnnnnnta--atgaagaagaaatgaattta |
137 |
Q |
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| T |
48070121 |
atagaattataacctcacataacattaattagagtaatgatatttaaacaacaaaaagttgacaatggtaaaaaaaaacgaagaagaagaaatgaattta |
48070220 |
T |
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| Q |
138 |
acaaacacattgtgaccgaacaatatttttaatccagtattcctaaaaaccaaatattttaat-------------taaaaccacacatattattttaa- |
223 |
Q |
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| T |
48070221 |
acaaacacagtgtgacccaacaatatttttaatccagtattcctaaaaaaaatatattttaatccagtaatacacttaaaaccacacatattattttaat |
48070320 |
T |
|
| Q |
224 |
--gactagcttcttgcaaacaaaacttaactaatactataaaagaaaaacttaaatgacaaagtaactaagatgcaattttgaaagnnnnnnncagtacc |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
48070321 |
gagactagcttcttgcaaacaaaacttaactaatactataaaagaaaaacttaaatgacaaagtaactaagatgcaattttgaaagaaaaaaacagtacc |
48070420 |
T |
|
| Q |
322 |
ccaatattctactgtggaaggtagttcgccctatggtccggtccggtccagcgagtctatgcaagtagaaggattacccgtctgcaatacaatgcgagac |
421 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48070421 |
ccaatagtctactgtggaaggtagttcgccctat----------ggtccagtgagtctatgcaagtagaaggattacccgtctgcaatacaatgcgagac |
48070510 |
T |
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| Q |
422 |
aaggcctagctatatac |
438 |
Q |
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||||||||||||||||| |
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| T |
48070511 |
aaggcctagctatatac |
48070527 |
T |
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