View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13118_high_23 (Length: 234)

Name: NF13118_high_23
Description: NF13118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13118_high_23
NF13118_high_23
[»] chr2 (2 HSPs)
chr2 (91-216)||(18025561-18025686)
chr2 (154-203)||(29395383-29395432)
[»] scaffold0004 (1 HSPs)
scaffold0004 (125-203)||(35548-35626)
[»] chr4 (2 HSPs)
chr4 (127-216)||(56290632-56290716)
chr4 (127-214)||(48197281-48197363)
[»] chr6 (2 HSPs)
chr6 (127-214)||(8365910-8365997)
chr6 (127-203)||(20772025-20772101)
[»] chr1 (2 HSPs)
chr1 (127-218)||(41012658-41012749)
chr1 (125-218)||(3967893-3967986)
[»] chr3 (3 HSPs)
chr3 (154-214)||(37494395-37494455)
chr3 (155-214)||(26569928-26569987)
chr3 (169-216)||(9688932-9688979)
[»] chr5 (2 HSPs)
chr5 (127-214)||(34114058-34114145)
chr5 (158-214)||(34091636-34091692)
[»] chr8 (1 HSPs)
chr8 (154-214)||(20189724-20189781)
[»] chr7 (1 HSPs)
chr7 (154-214)||(44274236-44274293)


Alignment Details
Target: chr2 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 91 - 216
Target Start/End: Original strand, 18025561 - 18025686
Alignment:
Q  91 acgggatcgcggtaaaatcaacttcatagctactacctctgttgtcaatgcggaaatatggcacggcgcggccaactcaataattggcacagtgcgggag 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18025561 acgggatcgcggtaaaatcaacttcatagctactacctctgttgtcaatgcggaaatatggcacggcgcggccaactcaataattggcacaatgcgggag 18025660  T
Q  191 cggggcgcgtagcaggcgctattttg 216  Q
    ||||||||||||||||| ||||||||    
T  18025661 cggggcgcgtagcaggcactattttg 18025686  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 29395383 - 29395432
Alignment:
Q  154 cggcgcggccaactcaataattggcacagtgcgggagcggggcgcgtagc 203  Q
    ||||||||||||| |||||||||||   ||||||||||||||||||||||    
T  29395383 cggcgcggccaacccaataattggcggggtgcgggagcggggcgcgtagc 29395432  T

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Target: scaffold0004 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 125 - 203
Target Start/End: Original strand, 35548 - 35626
Alignment:
Q  125 acctctgttgtcaatgcggaaatatggcacggcgcggccaactcaataattggcacagtgcgggagcggggcgcgtagc 203  Q
    |||||||||||||||||||||||  ||| |  |||||||||||||||||||||| | ||||||||||||||| ||||||    
T  35548 acctctgttgtcaatgcggaaatgcggcgcatcgcggccaactcaataattggcgcggtgcgggagcggggcacgtagc 35626  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 216
Target Start/End: Complemental strand, 56290716 - 56290632
Alignment:
Q  127 ctctgttgtcaatgcggaaatatggcacggcgcggccaactcaataattggcacagtgcgggagcggggcgcgtagcaggcgctattttg 216  Q
    |||||||||||||||||||||      |||| |||||||| ||||||||||| | ||||||| |||||||||||||||||||||||||||    
T  56290716 ctctgttgtcaatgcggaaat-----gcggcacggccaacccaataattggcgcggtgcgggggcggggcgcgtagcaggcgctattttg 56290632  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 214
Target Start/End: Complemental strand, 48197363 - 48197281
Alignment:
Q  127 ctctgttgtcaatgcggaaatatggcacggcgcggccaactcaataattggcacagtgcgggagcggggcgcgtagcaggcgctattt 214  Q
    |||||||||||||||||||||      ||||||||||||| ||| ||||| | | |||||||||||||| ||||||  ||||||||||    
T  48197363 ctctgttgtcaatgcggaaatg-----cggcgcggccaacccaaaaattgacgcggtgcgggagcggggggcgtagagggcgctattt 48197281  T

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Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 127 - 214
Target Start/End: Original strand, 8365910 - 8365997
Alignment:
Q  127 ctctgttgtcaatgcggaaatatggcacggcgcggccaactcaataattggcacagtgcgggagcggggcgcgtagcaggcgctattt 214  Q
    |||||||||||||||||||||  |||  ||||||||||||  |||||||||| | |||||||||| ||||| ||||| ||||||||||    
T  8365910 ctctgttgtcaatgcggaaatgcggcgtggcgcggccaacctaataattggcgcggtgcgggagcagggcgtgtagcgggcgctattt 8365997  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 20772101 - 20772025
Alignment:
Q  127 ctctgttgtcaatgcggaaatatggcacggcgcggccaactcaataattggcacagtgcgggagcggggcgcgtagc 203  Q
    |||| ||||||||| |||||| |||| |||| |  |||||  |||||||||| | ||||||||||||||||||||||    
T  20772101 ctctattgtcaatgtggaaatgtggcgcggcacaaccaaccaaataattggcgcggtgcgggagcggggcgcgtagc 20772025  T

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Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 127 - 218
Target Start/End: Original strand, 41012658 - 41012749
Alignment:
Q  127 ctctgttgtcaatgcggaaatatggcacggcgcggccaactcaataattggcacagtgcgggagcggggcgcgtagcaggcgctattttgtg 218  Q
    |||||||||||| ||||||||  ||| ||||||||||| ||||  ||||||  | |||||||||||||| ||||||| ||||||||||||||    
T  41012658 ctctgttgtcaaagcggaaatgcggcgcggcgcggccacctcacaaattggtgcggtgcgggagcggggtgcgtagcgggcgctattttgtg 41012749  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 218
Target Start/End: Complemental strand, 3967986 - 3967893
Alignment:
Q  125 acctctgttgtcaatgcggaaatatggcacggcgcggccaactcaataattggcacagtgcgggagcggggcgcgtagcaggcgctattttgtg 218  Q
    |||||||||||||| ||||||||  ||||||||||||||| | ||| ||||||  | | | ||||| ||| |||||||| ||||||||||||||    
T  3967986 acctctgttgtcaaagcggaaatgcggcacggcgcggccaccccaaaaattggtgcggcgagggagtgggtcgcgtagcgggcgctattttgtg 3967893  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 37494395 - 37494455
Alignment:
Q  154 cggcgcggccaactcaataattggcacagtgcgggagcggggcgcgtagcaggcgctattt 214  Q
    ||||||||||||||||||||||||| | |||||||||||||||| ||||  ||||||||||    
T  37494395 cggcgcggccaactcaataattggcgcggtgcgggagcggggcgggtagtgggcgctattt 37494455  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 26569987 - 26569928
Alignment:
Q  155 ggcgcggccaactcaataattggcacagtgcgggagcggggcgcgtagcaggcgctattt 214  Q
    |||||| ||||| ||||||||||||| ||||||||||||||  |||||| ||||||||||    
T  26569987 ggcgcgaccaacccaataattggcacggtgcgggagcggggtacgtagcgggcgctattt 26569928  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 9688932 - 9688979
Alignment:
Q  169 aataattggcacagtgcgggagcggggcgcgtagcaggcgctattttg 216  Q
    |||||||||| | |||| ||||||||||||||||| ||||||||||||    
T  9688932 aataattggcgcggtgcaggagcggggcgcgtagcgggcgctattttg 9688979  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 127 - 214
Target Start/End: Complemental strand, 34114145 - 34114058
Alignment:
Q  127 ctctgttgtcaatgcggaaatatggcacggcgcggccaactcaataattggcacagtgcgggagcggggcgcgtagcaggcgctattt 214  Q
    ||||||||| |||||||||||  |||| |||| |||||||  ||||||||||   |||||||||| ||||||||||| ||||||||||    
T  34114145 ctctgttgtgaatgcggaaatgcggcatggcgtggccaacctaataattggcgtggtgcgggagcagggcgcgtagcgggcgctattt 34114058  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 34091636 - 34091692
Alignment:
Q  158 gcggccaactcaataattggcacagtgcgggagcggggcgcgtagcaggcgctattt 214  Q
    ||||||||| ||||||||||||| ||||||||| |||| ||||||| ||| ||||||    
T  34091636 gcggccaacccaataattggcacggtgcgggagtggggtgcgtagcgggcactattt 34091692  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 20189724 - 20189781
Alignment:
Q  154 cggcgcggccaactcaataattggcacagtgcgggagcggggcgcgtagcaggcgctattt 214  Q
    ||||||||||||||||||   |||| | |||||||||||||||||||||||||||||||||    
T  20189724 cggcgcggccaactcaat---tggcgcggtgcgggagcggggcgcgtagcaggcgctattt 20189781  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 44274236 - 44274293
Alignment:
Q  154 cggcgcggccaactcaataattggcacagtgcgggagcggggcgcgtagcaggcgctattt 214  Q
    ||||||||||||||||||   |||| | |||||||||||||||||||||||||||||||||    
T  44274236 cggcgcggccaactcaat---tggcgcggtgcgggagcggggcgcgtagcaggcgctattt 44274293  T

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