View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13118_high_5 (Length: 397)
Name: NF13118_high_5
Description: NF13118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13118_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 12 - 381
Target Start/End: Original strand, 7754674 - 7755043
Alignment:
| Q |
12 |
atgagaagatattttttcaaagttttctacaggtctgctcatgttaaaggcataccaacaaaagagttcagtggattcatgatgatttagctcttcgagt |
111 |
Q |
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| T |
7754674 |
atgagaagatattttttcaaagttttctacaggtctgctcatgttaaaggcataccaacaaaagagttcagtggattcatgatgatttagctcttcgagt |
7754773 |
T |
|
| Q |
112 |
ttatatggtttaattttaacatcatgcttatgtagaatatctatatctcttgtagttataatgataatgctaccagaattaaaccaatcatgtcctccag |
211 |
Q |
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| T |
7754774 |
ttatatggtttaattttaacatcatgcttatgtagaatatctatatctcttgtagttataatgataatgctaccagaattaaaccaatcatgtcctccag |
7754873 |
T |
|
| Q |
212 |
caagtgattccaattgttttacagaatcaacatcatccagtatcagaagaactcttttgtgagaaagcctgtgttttatttcagagcttcctctaaatga |
311 |
Q |
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| T |
7754874 |
caagtgattccaattgttttacagaatcaacatcatccagtatcagaagaactcttttgtgagaaagcctgtgttttatttcagagcttcctctaaatga |
7754973 |
T |
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| Q |
312 |
gcttccgaacacttgtgtcgcctcacctatctcattcaaaagtgtcctttggagattttccagaccacca |
381 |
Q |
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| T |
7754974 |
gcttccgaacacttgtgtcgcctcacctatctcattcaaaagtgtcctttggagattttccagaccacca |
7755043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 13 - 374
Target Start/End: Original strand, 7838191 - 7838555
Alignment:
| Q |
13 |
tgagaagatattttttcaaagttttctacaggtctgctcatgttaaaggcataccaacaaaagagttcagtggattcatgatgatttagctcttcgagtt |
112 |
Q |
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| T |
7838191 |
tgagtagagatttttgcaaagttttctgcaggtctgctcatattaaaggcatacatacaaaagagttcaatggattcatgattatttagctcttcgagtt |
7838290 |
T |
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| Q |
113 |
tatatggtttaattttaacatcatgcttatgtagaatatctatatctcttgtagttataatgataatgctaccagaattaaaccaatcatgtcctccagc |
212 |
Q |
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| T |
7838291 |
tgtatgttttaattttaacatcatgcttatgtagaacatctatatctcttgttgttacaatgattctgctaccagaaccaaaccaatcatgtcctccagc |
7838390 |
T |
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| Q |
213 |
aagtgattccaattgttttacagaatcaacatcatccagtatcagaagaactcttttgtgagaaagcctgtgttttatttcagagcttcctctaaatgag |
312 |
Q |
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| ||||| |||||||||||| |||||||||||||||||||| ||||||||||||||| | | ||| ||| ||||||||||||||||||||||| | | | |
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| T |
7838391 |
taatgatttcaattgttttactgaatcaacatcatccagtatgagaagaactcttttgcgggcaagtctgcgttttatttcagagcttcctctatacgtg |
7838490 |
T |
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| Q |
313 |
cttccgaaca---cttgtgtcgcctcacctatctcattcaaaagtgtcctttggagattttccag |
374 |
Q |
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||||| | || ||||||| ||||||| |||||| || ||||||||||||||||| |||||| |
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| T |
7838491 |
cttcccatcatggtttgtgtctcctcacccatctcagacagaagtgtcctttggagatcttccag |
7838555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 13 - 374
Target Start/End: Original strand, 7761774 - 7762144
Alignment:
| Q |
13 |
tgagaagatattttttcaaagttttctacaggtctgctcatgttaaaggcataccaacaaaagagttcagtggattcatgatgatttagctcttcgagtt |
112 |
Q |
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|||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| | || |
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| T |
7761774 |
tgagaagagattttttcaaagttttctacaggtctactcatattaaaggcataccaacagaagagttcagtggattcatgatgatttagctcttcaaatt |
7761873 |
T |
|
| Q |
113 |
tatatggtttaattttaacatcatgc------ttatgtagaatatctatatctcttgtagttataatgataatgctaccagaattaaaccaatcatgtcc |
206 |
Q |
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| T |
7761874 |
tatatgttttgattttaatatcatgcttatgcttatgtagaacatcgatatctcttgttgttacaatgacaatgctaccagaaccaaaccaatcttgtcc |
7761973 |
T |
|
| Q |
207 |
tccagcaagtgattccaattgttttacagaatcaacatcatccagtatcagaagaactcttttgtgagaaagcctgtgttttatttcagagcttcctcta |
306 |
Q |
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|||||| | |||||||||||||||||| |||||||||||||| |||||||||||||||||| ||| ||||||| || ||||||| ||||||||||| || |
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| T |
7761974 |
tccagctaatgattccaattgttttaccgaatcaacatcatcgagtatcagaagaactcttctgttagaaagcttgcattttattacagagcttcctgta |
7762073 |
T |
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| Q |
307 |
aatgagcttccgaaca---cttgtgtcgcctcacctatctcattcaaaagtgtcctttggagattttccag |
374 |
Q |
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||| |||||| | || ||||||| || |||| |||||| || ||||||||||||||||| |||||| |
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| T |
7762074 |
gatgtgcttccaatcatggtttgtgtctccacacccatctcagacagaagtgtcctttggagatcttccag |
7762144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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