View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13118_low_1 (Length: 2026)

Name: NF13118_low_1
Description: NF13118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13118_low_1
NF13118_low_1
[»] scaffold0082 (1 HSPs)
scaffold0082 (1355-1539)||(28634-28818)
[»] chr7 (17 HSPs)
chr7 (1539-1735)||(6101423-6101620)
chr7 (1844-2004)||(6100995-6101157)
chr7 (794-885)||(6111386-6111477)
chr7 (1844-1960)||(6234715-6234831)
chr7 (1844-1966)||(6089152-6089274)
chr7 (262-335)||(6103109-6103182)
chr7 (1844-1960)||(6208297-6208413)
chr7 (1844-1960)||(6237596-6237712)
chr7 (1278-1339)||(6101646-6101707)
chr7 (1844-1945)||(6106344-6106445)
chr7 (108-164)||(6103192-6103248)
chr7 (1844-1960)||(6180714-6180830)
chr7 (1844-1960)||(6247535-6247651)
chr7 (1109-1185)||(6101977-6102050)
chr7 (1844-1945)||(6213163-6213264)
chr7 (1854-1977)||(6094506-6094631)
chr7 (823-885)||(6209967-6210029)


Alignment Details
Target: scaffold0082 (Bit Score: 177; Significance: 1e-94; HSPs: 1)
Name: scaffold0082
Description:

Target: scaffold0082; HSP #1
Raw Score: 177; E-Value: 1e-94
Query Start/End: Original strand, 1355 - 1539
Target Start/End: Complemental strand, 28818 - 28634
Alignment:
Q  1355 tggttcgcaaagcttgcacttcccggcgaacgaattgaatgaatcatcatgaaaattaattaaacacgtccgttacttaaataccagtaggctgtaaaag 1454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28818 tggttcgcaaagcttgcacttcccggcgaacgaattgaatgaatcatcatgaaaattaattaaacacgtccgttacttaaataccagtaggctgtaaaag 28719  T
Q  1455 cagctccccctgaaagccgtatggatcctttcgctcgatcggcaggctctcctccctacagagttgcttctgttagaagagaaga 1539  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28718 cagctccccctgaaagccgtatggatcccttcgctcgatcggcaggctctcctccctacagagttgcttctgttcgaagagaaga 28634  T

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Target: chr7 (Bit Score: 130; Significance: 2e-66; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-66
Query Start/End: Original strand, 1539 - 1735
Target Start/End: Complemental strand, 6101620 - 6101423
Alignment:
Q  1539 attatattataaaacagttgctgcgaaaaaagcgcaaaccaaaagttcatgattggctagaagaactacaagaattgagagagaccgcggatggtctgaa 1638  Q
    ||||||||||||||||  ||| | ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||| |  ||||||||||    
T  6101620 attatattataaaacaactgcagggaaaaaagcgcaaaccaaaagtttatgattagctagaagaactacaagaattgagagaaaccacatatggtctgaa 6101521  T
Q  1639 tacctcgatgacagttatgacataagt-aattgtcaaacaaatgaaacgacataaggaagatatacctctcattttatcgaccgaattggttggggaa 1735  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||| |||||    
T  6101520 tacctcaatgacagttatgacataagtgaattgtcaaacaaatgaaatgacataaggaagatataactctcactttatcgaccgaattggttagggaa 6101423  T

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Target: chr7; HSP #2
Raw Score: 112; E-Value: 9e-56
Query Start/End: Original strand, 1844 - 2004
Target Start/End: Complemental strand, 6101157 - 6100995
Alignment:
Q  1844 tattttggatgatgtttggaggtacatcgattttcaaaaggctggaattcagccaaaagtgaatggcattaaactcattttgacaactcgtttgaaacat 1943  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||||||| |  ||||||||||||||||||| |||||||||||||||||||     
T  6101157 tattttggatgatgtttggaggtacatcgattttcagaaagctggaattcagccaagaacgaatggcattaaactcattctgacaactcgtttgaaacac 6101058  T
Q  1944 gtgtgtcaacaaatgga--ctgtatcagatcatatgctaccgattatgcctctcaatagctat 2004  Q
    |||||||||||||||||   |||| || |||||||||||||||||||||||||||||||||||    
T  6101057 gtgtgtcaacaaatggattttgtaccaaatcatatgctaccgattatgcctctcaatagctat 6100995  T

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Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-29
Query Start/End: Original strand, 794 - 885
Target Start/End: Complemental strand, 6111477 - 6111386
Alignment:
Q  794 atctgtgtttaggaaagatattgatcatgggtagagcaaaacacgagcactactagaaacacgttacaagagtagaaaatggtcgtaaatgg 885  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||| || |||||| |||||||||||||||||||||| |||||||    
T  6111477 atctgtgtttaggaaagatattgataatgggtagaggaaaacacgagcactgctggaaacatgttacaagagtagaaaatggtcttaaatgg 6111386  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-23
Query Start/End: Original strand, 1844 - 1960
Target Start/End: Complemental strand, 6234831 - 6234715
Alignment:
Q  1844 tattttggatgatgtttggaggtacatcgattttcaaaaggctggaattcagccaaaagtgaatggcattaaactcattttgacaactcgtttgaaacat 1943  Q
    ||||||||||||||||||||  || || ||||| || ||||  |||||||| ||||||||||||||||||||| | |||||||||||||| |||||||||    
T  6234831 tattttggatgatgtttggaaatatattgatttgcagaaggtgggaattcatccaaaagtgaatggcattaaagtgattttgacaactcggttgaaacat 6234732  T
Q  1944 gtgtgtcaacaaatgga 1960  Q
    || ||||| || |||||    
T  6234731 gtatgtcaccagatgga 6234715  T

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Target: chr7; HSP #5
Raw Score: 55; E-Value: 9e-22
Query Start/End: Original strand, 1844 - 1966
Target Start/End: Complemental strand, 6089274 - 6089152
Alignment:
Q  1844 tattttggatgatgtttggaggtacatcgattttcaaaaggctggaattcagccaaaagtgaatggcattaaactcattttgacaactcgtttgaaacat 1943  Q
    ||||||||||||||||||||  ||||| |||||  ||||||  ||||||||  |||| |||||||| |||||| | ||| |||||||||||||||||| |    
T  6089274 tattttggatgatgtttggaaatacattgatttggaaaaggtgggaattcatacaaaggtgaatggtattaaagtaattctgacaactcgtttgaaactt 6089175  T
Q  1944 gtgtgtcaacaaatggactgtat 1966  Q
    ||||||||||| ||||| |||||    
T  6089174 gtgtgtcaacagatggattgtat 6089152  T

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Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-21
Query Start/End: Original strand, 262 - 335
Target Start/End: Complemental strand, 6103182 - 6103109
Alignment:
Q  262 atggtaactaaatatgactaaaatcagtacggaatgtgaagtttattaggggagagctcaatcttttctctttt 335  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||| ||||||    
T  6103182 atggtaattaaatatgactaagatcagtacggaatgtgaagtttatcaagggagagctcaatcttttttctttt 6103109  T

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Target: chr7; HSP #7
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 1844 - 1960
Target Start/End: Complemental strand, 6208413 - 6208297
Alignment:
Q  1844 tattttggatgatgtttggaggtacatcgattttcaaaaggctggaattcagccaaaagtgaatggcattaaactcattttgacaactcgtttgaaacat 1943  Q
    ||||||||||||||||||||  || || ||||| || ||||  |||||||| | ||||||||||||||||||| | |||||||||||||| |||||||||    
T  6208413 tattttggatgatgtttggaattatattgatttgcagaaggtgggaattcatcaaaaagtgaatggcattaaagtgattttgacaactcggttgaaacat 6208314  T
Q  1944 gtgtgtcaacaaatgga 1960  Q
    || ||||| || |||||    
T  6208313 gtatgtcaccagatgga 6208297  T

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Target: chr7; HSP #8
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 1844 - 1960
Target Start/End: Complemental strand, 6237712 - 6237596
Alignment:
Q  1844 tattttggatgatgtttggaggtacatcgattttcaaaaggctggaattcagccaaaagtgaatggcattaaactcattttgacaactcgtttgaaacat 1943  Q
    ||||||||||||||||||||  || || ||||| || ||||  |||||||| | ||||||||||||||||||| | |||||||||||||| |||||||||    
T  6237712 tattttggatgatgtttggaattatattgatttgcagaaggtgggaattcatcaaaaagtgaatggcattaaagtgattttgacaactcggttgaaacat 6237613  T
Q  1944 gtgtgtcaacaaatgga 1960  Q
    || ||||| || |||||    
T  6237612 gtatgtcaccagatgga 6237596  T

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Target: chr7; HSP #9
Raw Score: 50; E-Value: 9e-19
Query Start/End: Original strand, 1278 - 1339
Target Start/End: Complemental strand, 6101707 - 6101646
Alignment:
Q  1278 agaatccaaacaatttgaatgtatatgattctgaaagtgagattaaacgcttaaaagaagtg 1339  Q
    ||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  6101707 agaatccaagcaatttgaatgtaagtgattctgaaagtgagattaaacgcttaaaagaagtg 6101646  T

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Target: chr7; HSP #10
Raw Score: 46; E-Value: 2e-16
Query Start/End: Original strand, 1844 - 1945
Target Start/End: Complemental strand, 6106445 - 6106344
Alignment:
Q  1844 tattttggatgatgtttggaggtacatcgattttcaaaaggctggaattcagccaaaagtgaatggcattaaactcattttgacaactcgtttgaaacat 1943  Q
    ||||||||||||||||||||  || || ||||| || ||||  |||||||| ||||||||||||||||||||| | ||| | ||||| ||||||||||||    
T  6106445 tattttggatgatgtttggaaatatattgatttgcagaaggtaggaattcatccaaaagtgaatggcattaaagtgattctaacaacacgtttgaaacat 6106346  T
Q  1944 gt 1945  Q
    ||    
T  6106345 gt 6106344  T

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Target: chr7; HSP #11
Raw Score: 45; E-Value: 8e-16
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 6103248 - 6103192
Alignment:
Q  108 tgaattgttcttgattaaaagtgattaagggtgaaaaatatgtgttggttttgtttt 164  Q
    |||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||    
T  6103248 tgaattgttcttgattgaaagtgatcaagggtgaaaaatatgtgtaggttttgtttt 6103192  T

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Target: chr7; HSP #12
Raw Score: 45; E-Value: 8e-16
Query Start/End: Original strand, 1844 - 1960
Target Start/End: Complemental strand, 6180830 - 6180714
Alignment:
Q  1844 tattttggatgatgtttggaggtacatcgattttcaaaaggctggaattcagccaaaagtgaatggcattaaactcattttgacaactcgtttgaaacat 1943  Q
    ||||||||||||||||||||  || || |||||  | ||||  |||||||| |||||||| |||||||||||| | ||| | ||||||||||||||||||    
T  6180830 tattttggatgatgtttggaaatatattgatttgaagaaggtgggaattcatccaaaagtaaatggcattaaagtgattctaacaactcgtttgaaacat 6180731  T
Q  1944 gtgtgtcaacaaatgga 1960  Q
    || ||||| || |||||    
T  6180730 gtatgtcaccagatgga 6180714  T

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Target: chr7; HSP #13
Raw Score: 45; E-Value: 8e-16
Query Start/End: Original strand, 1844 - 1960
Target Start/End: Complemental strand, 6247651 - 6247535
Alignment:
Q  1844 tattttggatgatgtttggaggtacatcgattttcaaaaggctggaattcagccaaaagtgaatggcattaaactcattttgacaactcgtttgaaacat 1943  Q
    ||||||||||||||||||||  || || |||||  | ||||  |||||||| |||||||| |||||||||||| | ||| | ||||||||||||||||||    
T  6247651 tattttggatgatgtttggaaatatattgatttgaagaaggtgggaattcatccaaaagtaaatggcattaaagtgattctaacaactcgtttgaaacat 6247552  T
Q  1944 gtgtgtcaacaaatgga 1960  Q
    || ||||| || |||||    
T  6247551 gtatgtcaccagatgga 6247535  T

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Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.00000000000001
Query Start/End: Original strand, 1109 - 1185
Target Start/End: Complemental strand, 6102050 - 6101977
Alignment:
Q  1109 tatatgggtttaaccacttttttctgtcttaaatatctttcggataatacctatattttagctacactgaattttta 1185  Q
    ||||||| ||||||||||||   || |||||||||||||||  ||||||||||||||||||||||| ||||||||||    
T  6102050 tatatggatttaaccacttt---ctctcttaaatatctttcaaataatacctatattttagctacattgaattttta 6101977  T

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Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000005
Query Start/End: Original strand, 1844 - 1945
Target Start/End: Complemental strand, 6213264 - 6213163
Alignment:
Q  1844 tattttggatgatgtttggaggtacatcgattttcaaaaggctggaattcagccaaaagtgaatggcattaaactcattttgacaactcgtttgaaacat 1943  Q
    ||||||||||||||||||||  || || ||||| || |||   |||||||| ||| |||| |||||||||||| | |||||||||||||||||| |||||    
T  6213264 tattttggatgatgtttggaaatatattgatttgcagaagttgggaattcatccagaagtaaatggcattaaagtgattttgacaactcgtttggaacat 6213165  T
Q  1944 gt 1945  Q
    ||    
T  6213164 gt 6213163  T

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Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000008
Query Start/End: Original strand, 1854 - 1977
Target Start/End: Complemental strand, 6094631 - 6094506
Alignment:
Q  1854 gatgtttggaggtacatcgattttcaaaaggctggaattcagccaaaagtgaatggcattaaactcattttgacaactcgtttgaaacatgtgtgtcaac 1953  Q
    ||||||||||  ||||| ||||| |||||||  |||||||  | ||| |||||||  |||||| | ||| | ||||||||||||||||||||||||||      
T  6094631 gatgtttggaaatacattgatttgcaaaaggtgggaattcctctaaatgtgaatgtaattaaagtgattctaacaactcgtttgaaacatgtgtgtcacg 6094532  T
Q  1954 aaatggactgtat--cagatcatatg 1977  Q
    | ||||| |||||  |||||||||||    
T  6094531 agatggattgtatgccagatcatatg 6094506  T

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Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000008
Query Start/End: Original strand, 823 - 885
Target Start/End: Complemental strand, 6210029 - 6209967
Alignment:
Q  823 ggtagagcaaaacacgagcactactagaaacacgttacaagagtagaaaatggtcgtaaatgg 885  Q
    ||||||| |||||| ||||| | || |||||||||||||  ||||||||||||||||||||||    
T  6210029 ggtagaggaaaacatgagcattgctggaaacacgttacagaagtagaaaatggtcgtaaatgg 6209967  T

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